3300030639: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 20_T1F_StrEL1 developmental time series (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030639
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128996 | Gp0213237 | Ga0187745
• Sample Name: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 20_T1F_StrEL1 developmental time series (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72885736
• Sequencing Scaffolds: 16
• Novel Protein Genes: 22
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7982
  • Long. (^o): -77.8599
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000076	Metatranscriptome	2620	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F002609	Metagenome / Metatranscriptome	543	Y
F003026	Metagenome / Metatranscriptome	512	Y
F003866	Metagenome / Metatranscriptome	464	Y
F004725	Metagenome / Metatranscriptome	426	Y
F006424	Metagenome / Metatranscriptome	373	Y
F018723	Metagenome / Metatranscriptome	233	Y
F025035	Metagenome / Metatranscriptome	203	Y
F030772	Metagenome / Metatranscriptome	184	Y
F039148	Metatranscriptome	164	Y
F064387	Metatranscriptome	128	Y
F070138	Metatranscriptome	123	Y
F071266	Metatranscriptome	122	Y
F074901	Metatranscriptome	119	N
F076865	Metatranscriptome	117	Y
F088980	Metagenome / Metatranscriptome	109	Y
F093247	Metatranscriptome	106	Y
F104400	Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187745_1000997	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	569
Ga0187745_1006811	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	620
Ga0187745_1009925	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	953
Ga0187745_1012318	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	589
Ga0187745_1028350	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	968
Ga0187745_1030367	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	776
Ga0187745_1035366	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	560
Ga0187745_1050005	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	835
Ga0187745_1050571	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	586
Ga0187745_1056092	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	763
Ga0187745_1067447	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	904
Ga0187745_1077125	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	523
Ga0187745_1079598	Not Available	616
Ga0187745_1081590	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	554
Ga0187745_1100543	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	556
Ga0187745_1102130	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	627

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187745_1000997	Ga0187745_10009971	F004725	MATSAPLLGKEGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSNDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFCTQVLMVIGYCAALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFP
Ga0187745_1001554	Ga0187745_10015541	F000023	DAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEAR
Ga0187745_1006811	Ga0187745_10068111	F088980	NTKGDGRFYQIELEVDGGTVADGGRFVWFNSGLQKVVEIGLSDDKIDLFMPQDLYQKSRKWAGDIAKMGNNNTRATMEALVFQNEKGEYECSFIECNRRPQVENEALALLQTDSKGNRRYTFAELMMRAKGYPAPTFAPAKDCSVVLHARWLHGNPDSDGKITYQAGNILGMTGPRLDYIKAELMAPGEISFTADPQLGKAVITAN
Ga0187745_1009925	Ga0187745_10099251	F002609	HNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRIKHNFFVLALWTCVWMLGTYPLGRPLSEGWRFMFTVSFFARVGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187745_1012318	Ga0187745_10123181	F039148	MMGKESKLNKDAYVNPTKAITNMNDRLRERKVDFQDLKDQFKRELKVEFPQASEERLQAMAQRLLNEKLLADEKMSRFPVQHESFRPNLSLTTQDRRYKEHFHPGTFVWNEAEKREAWTCCLNFDHGSRGCESRVVNPDSWSYQGFERASA
Ga0187745_1017292	Ga0187745_10172922	F104400	CAACLSAPVHQLYGYTVTTPELRTLPAAEQRERMVSFLKNQYLDTSNGRTRLSGLVPRDLFMRSMYVAVAYTMYSTVERTLVANWPQ
Ga0187745_1022915	Ga0187745_10229151	F006424	VIGSGGVNTVFVRDYFPEFGTDLVTTLSSLDVYNFSHFYLLVFLFMLF
Ga0187745_1027551	Ga0187745_10275511	F000241	SSCSRPAHFAMARPTLLPAVAVLAGVYSLASFCFVGSPQTPRACSRVPARVSAEYLERCGPKDSDVPFNAGAASGAGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0187745_1028350	Ga0187745_10283501	F074901	APLLGEKKQAHSKASIFYGADEYLEELKKKYAHDHEIAAMKNLLPGEGDPNAAGVAESKDKMLKVEKNNENRSLKTNRLFPTPNKPDPMPHNLAFLFTKITPEQMMYMWNVLTFIFLTQCAMIVAYCAALAMFPGMWWTCTLCFGIPFSYVAIQNIYIDHDVMHGATFPVYEFQKFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWSSNWYKYILTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGPGGKCNKEFWSKWVPRRVKHNSFVLCLWALVWLLGTYPLGRPLSEGWRFVF
Ga0187745_1030367	Ga0187745_10303671	F030772	ALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFVSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVH
Ga0187745_1035366	Ga0187745_10353661	F004725	RSQTDLLQFSVAIVPMATSAPLLGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSNDKMLSVQKNDENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFCTQVLMVIGYCAALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFP
Ga0187745_1043529	Ga0187745_10435291	F070138	LGQLPPDTMTAAEAKFYRDGYTHRTVLFDSMQDAKAEYGGALNFSAYRQGRDRQYLGVNGKNYYAKPWGNDSSNIQAVINGPSYWKRVYYRENIAARFAREDAEAAERKAQAEIAEALSTGAGEAPPRRSQSESALQKPKTLDAKDTYAPIKENMKPFVEKQGKPRIRAMEAGERLHFFNTLHNKYHMKAGGKNLEWNVSKQTHRSTKNELNWILSNYFRTDSHAV
Ga0187745_1050005	Ga0187745_10500051	F064387	ENVTKLTRGTVKLCQVVGVFPGARMNDGTEEELDVDVELLNWEDCAQNLVSRVDKTWRQISSQKYRSILDLLGKKADHSVLRLLQISQQHIESQLDRVRHERELWKEVVDKRAQQPLQLALTLKDPHTGQPLPGPPGYGLPGLDGNPMAGPLSGRGLPGGMTSDPMQLGPSGQGMGPDQPKASPLAKRIARPQPGPPAPKAST
Ga0187745_1050571	Ga0187745_10505711	F018723	AREGHGAMTAEKTGDGKGNPAAKKGGKEPFVQQFELKDVYPHFCDRKTKLLPLADVPYVLRAMGLTIYSEEEKSIREQVEKVDGMGKPVSMKTMQGWIEEHGSKYVKSYDDAYSAVGTLCHEGIIGDKSGRIQVPFLRHLVSEVGDKIKAETFDKIMKGGDSAVGTAIKGDSCPLDEFLNFLQK
Ga0187745_1056092	Ga0187745_10560921	F071266	TKQMKAMGYAGSSNNPLARGVEGCCPGTSDAHAKLVVDDENKDKAELKLLNDLIAKWRVPGVIKVAPRKVIPDFSNRGHTGLSVEHVHYLATSFKEKGFQKRKGNEGHDIPVLVCEKTSSELGQKSIENWRSKLNDEKGFAPQEHYERLFRGEELYTSLGNGHFNQALNLFFRECPSIYSQEKYTIGQDRDLKEAVYQGVGAIVLKAEIPLRDRETISKLLNSKREFKWNVHPDGTLDITDAFEDTRTCKQFEA
Ga0187745_1067447	Ga0187745_10674471	F076865	KLAKRLQKIQMNPNFRHHPVWDYYEWILHKSRYMKACERAGIPMIDTIHLEKGFNARDVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGEVFDEIRNFFCDGEWAYSVYTDGVDYEGFWEQPKGKLKEACKKLAIQTMEEVKKVHKWEGKRINSLLNRIDIGIIPDKSRKLGYRIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQAHEMLKRSLAAKRKMPSPQKVRQLLDVLEQRLKES
Ga0187745_1077125	Ga0187745_10771251	F003026	FTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187745_1079598	Ga0187745_10795981	F004725	MATSAPLLGKEGKKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSSDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFTQVLMVIGYCAALACFPDFWWTCTLCFGIPFAYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFFS
Ga0187745_1081590	Ga0187745_10815901	F003866	LKPPRAIEPADAFAKQHFSAMGDDGDVRLTTVSKDGEKLGNLIPAGSMSSAEGKGAIPGKWKIPGVQEPVELKVSGSSVKSVQQPFGNQPFLGEIEEGEKMLGLHVTLGGFPMKAWMKKEGQQTVLTFSNGGRWSKL
Ga0187745_1084510	Ga0187745_10845101	F000076	RQKGSNSQPSLAPPFPCWCTMAEEEGQEVIFTENTAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVTAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0187745_1100543	Ga0187745_11005431	F025035	MHGDTVYVKVMTGRYIGELDGTTKLEWVKARGTKKDKEHALTVEKMNNRDEPIKNGDVVMFVMPQGVHMDVLGSAVRARYYDPRGEWQKITIVKQDGGDVYSGDQIFLRGHQGEYLDANPLERAPDGEVKARWRDEGEWQVMWIEK
Ga0187745_1102130	Ga0187745_11021301	F093247	SSNMNESAPPLLQGGGILGRFENVRVKKSAKKTVTCDAATPEYLRHDFLKPQHLPIERVDEEANFIATSNINETRFHKGFHRRHQADIQQDAARLEHEAARDWARQERAAAQASAAHHLRDKCTFNILTGEGVGRECEFRHVGKKILNPYGSMQATFSEHDREERHRVKNSKHRFFEHPAPEKQVRAANLFNEGLQTTVRESAVLGYG