3300030637: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 16_T1E_8DEL1 developmental time series (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030637
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128996 | Gp0213233 | Ga0187741
• Sample Name: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 16_T1E_8DEL1 developmental time series (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 56940414
• Sequencing Scaffolds: 8
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	2
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7982
  • Long. (^o): -77.8599
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000070	Metagenome / Metatranscriptome	2710	N
F000241	Metagenome / Metatranscriptome	1481	Y
F001767	Metagenome / Metatranscriptome	638	Y
F001926	Metagenome / Metatranscriptome	616	Y
F003025	Metagenome / Metatranscriptome	512	Y
F004604	Metagenome / Metatranscriptome	431	Y
F006424	Metagenome / Metatranscriptome	373	Y
F039671	Metagenome / Metatranscriptome	163	Y
F057086	Metagenome / Metatranscriptome	136	Y
F074901	Metatranscriptome	119	N
F098648	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187741_111489	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	520
Ga0187741_114014	All Organisms → cellular organisms → Eukaryota	2044
Ga0187741_119609	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	938
Ga0187741_123415	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	722
Ga0187741_155932	Not Available	612
Ga0187741_157397	Not Available	535
Ga0187741_168401	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1372
Ga0187741_171489	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	791

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187741_111489	Ga0187741_1114891	F001926	DVRHEDIPEINNPNIRFPVLEGDKVIKEVDNGGRSVHPVPPPNSEIIERIRKRYESKRIKIEKLLTLGYTTSGDP
Ga0187741_114014	Ga0187741_1140141	F039671	VGMKEPLLIMLDITPPTVSIPKDKGVESIITKPSVSLDSSPQIIPPYTAAP
Ga0187741_119609	Ga0187741_1196091	F074901	MATSAPLLGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSNDKMLSVQKNDENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFCTQVLMVIGYCAALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFVSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKH
Ga0187741_123415	Ga0187741_1234152	F003025	FALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSMMMQQGK
Ga0187741_136334	Ga0187741_1363341	F000070	NALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNEIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKNSDAVRKMEKQRNMDEQNWKAQMDAVHDVLDTKVNEK
Ga0187741_146667	Ga0187741_1466671	F000241	PAASSCSRPAHFAMARPTLLPAVAVLAGVYSLASFCFVGSPQTPRDCSRVPARVSAEYLERCGPKDSDVPFNAGAASGAGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0187741_146913	Ga0187741_1469131	F000023	FDVGELKDLLTNSKGEVNHIRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLSEDMINLKNELTAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATVRHDITAVETNLEESKSKLAMDTDHAINALNGRIDFTNKDLAATQESLHTTQNSLSDCFNE
Ga0187741_148146	Ga0187741_1481461	F006424	VIGSGGVNTVFVRDYFPEFGTDLVTTLSSLDVYNFSHFVSIGLVFIFFYE
Ga0187741_155932	Ga0187741_1559321	F004604	AAAGLAVGAHAGLAVAFRARAARQAETKPAEKSKYVETVADERLFEQVYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGLYGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK
Ga0187741_157397	Ga0187741_1573971	F057086	MDMYEERPPEIFTGGYFDQANIVNQTEGLQDFRRRQEGHLIIADDRPLLVMSFGLKYQGPNPSKYKIEGKYDIPVGFKVIIKWEEDEIVFMTRQGTFGPEFQIVYLPQSPTPEDFTVFEWNANIAEIWDQFLTVIEGKEDRDMRLFNQGPWRTFGVTRDEVQ
Ga0187741_160328	Ga0187741_1603281	F098648	HLTSAAFSSPAQSRMSRRAYESGKANVGAEISDTDVQPPPPPVLECDEGCMTAIFDCIEEGCSVDALLKLDQKLADDEQRIADTVKELEGVQKTAYSPENAGTLAWLNNFLSRSGSLRGQLQALQGVKDSNFVQQIIKAASVAFGGGRPNDYPKVGVSPYSS
Ga0187741_168401	Ga0187741_1684011	F001767	MATSAPLLGKEGKKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSSDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFTQVLMVIGYCAALACFPDFWWTCTLCFGIPFAYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRIKHNFFVLALWTCVWMLGTYPLGRPLSGGWRFMFTVSFFARVGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKK
Ga0187741_171489	Ga0187741_1714892	F003025	DTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSMMMQQGK