Sample 3300029898

Basic Information
IMG/M Taxon OID	3300029898 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133355 \| Gp0289631 \| Ga0247046
Sample Name	Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A1b
Sequencing Status	Permanent Draft
Sequencing Center	DMAC, Technical University of Denmark
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300029898 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0133355 | Gp0289631 | Ga0247046

Sample Name

Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A1b

Sequencing Status

Permanent Draft

Sequencing Center

DMAC, Technical University of Denmark

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	188451592
Sequencing Scaffolds	27
Novel Protein Genes	27
Associated Families	23

Dataset Contents

Total Genome Size

188451592

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria	2
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris

Ecosystem Assignment (GOLD)
Name	Cryconite Microbial Communities Around The Greenland Ice Sheet
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Ecosystem Assignment (GOLD)

Name

Cryconite Microbial Communities Around The Greenland Ice Sheet

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → cryoconite hole → cryoconite deposit
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → cryoconite hole → cryoconite deposit

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	Greenland: Tasiilaq
Coordinates	Lat. (^o)	65.41	Long. (^o)	-38.51	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Greenland: Tasiilaq

Coordinates

Lat. (^o)

65.41

Long. (^o)

-38.51

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F003908	Metagenome / Metatranscriptome	462	Y
F006162	Metagenome / Metatranscriptome	380	Y
F014178	Metagenome / Metatranscriptome	265	Y
F014637	Metagenome	261	Y
F020721	Metagenome / Metatranscriptome	222	Y
F021141	Metagenome	220	Y
F023181	Metagenome / Metatranscriptome	211	Y
F023221	Metagenome / Metatranscriptome	211	Y
F025512	Metagenome / Metatranscriptome	201	Y
F037822	Metagenome / Metatranscriptome	167	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247046_1000498	All Organisms → cellular organisms → Bacteria → Terrabacteria group	16055	Open in IMG/M
Ga0247046_1005237	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	4912	Open in IMG/M
Ga0247046_1005388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4823	Open in IMG/M
Ga0247046_1006137	All Organisms → cellular organisms → Bacteria	4428	Open in IMG/M
Ga0247046_1007692	Not Available	3810	Open in IMG/M
Ga0247046_1008921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium	3426	Open in IMG/M
Ga0247046_1009213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3350	Open in IMG/M
Ga0247046_1010745	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2995	Open in IMG/M
Ga0247046_1012848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia	2631	Open in IMG/M
Ga0247046_1012977	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2611	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0247046_1000498

All Organisms → cellular organisms → Bacteria → Terrabacteria group

16055

4912

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

4823

Open in IMG/M

Ga0247046_1006137

All Organisms → cellular organisms → Bacteria

4428

Open in IMG/M

Ga0247046_1007692

Not Available

3810

Open in IMG/M

Ga0247046_1008921

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium

3426

Open in IMG/M

Ga0247046_1009213

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

3350

Open in IMG/M

Ga0247046_1010745

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

2995

Open in IMG/M

Ga0247046_1012848

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia

2631

Open in IMG/M

Ga0247046_1012977

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

2611

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247046_1000498	Ga0247046_100049817	F056330	MPTDALLALQASVTKAATFNGAALILLTGTPRRGLKARVIYSAATSTTTNACTFSLDVSYDAGSTWNSDFYQPIALALTTTSISGEIFIPFEVSPTSVVNGIQIRLTATVSGGGVATITYQGDITLARP
Ga0247046_1005237	Ga0247046_10052374	F003908	VKVTTSFAAAVLALGACSSPAKQPMTLEQMIAADPLPLAKGAKWTYNVTVKRYDPDSDKESTKTLTWTTEVLDAHEVNGVTAFRVKGWPTDLASDLESAAPVATERTLLRSGNNFLFGATTEPTLDGAEGWFTWPVIDGQKICPKTETVYCWQVTAVDTGYALSFYTGPDEQTFDIEPGTGVSRFHYAHHGTTNEVEAKLTSFTKGR
Ga0247046_1005388	Ga0247046_10053886	F061998	MTALEKGVTAFLAGLIAVALATTLVGPGKQTPAVINSAGGAVSGSLLAAQGSH
Ga0247046_1006137	Ga0247046_10061371	F083559	SRMKDPVSRELYSTNILFYLPAGEMHGMHNVYDMAQRFPFTRIRGPRTSVPHCPQREGRLWYDANPEGVIMEDLRLTPAALPDGRPGFFVTGQGYRGKVMMPDGRFVHDVGVYGGYLDTEERPGQLELQHLFGGIEFGATFTDDDAGRMLAELGEGIWVKGITGNGAEGTHVESYKNSVKLPCLDGRKTLIGARSMSETKQIAYFESQSADGLSGFRMGGVIDGLNRALGLEIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDYPETLDAVHPGINEQYEGWVVWLKFDADGRPVIEACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYATVTAQLSSHGRS
Ga0247046_1007692	Ga0247046_10076922	F074174	VIDLSERTRRISGSRLLEILQTYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLIVNDLTILRDSEVAEIVEMLPGRIYPIDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLGSIQADAVFIAPPGRNAHKKADARVWMWEAWWQGDPYLNIEGYYRDTVFVQRTNEDSSYDRALGTVFAAAESSPLLVLQTTLQNAAHFKTVMGEFRPHVEIISPHADETYVVGRR
Ga0247046_1008921	Ga0247046_10089213	F045483	VTETWRQSTPTAKPRRLVSGLSVLGFSLLVLTGCAVPGGYDVNSLHLQPEAALVYPGSTDVHTNYYNGSPGNYVSKGAVASIGNLATTIHTQLEVLAFFSQTLAADGWTQNGKSDQETTPEGLPASTISWGKQSLHLSYSVEAWREGETTKYWTRISSDE
Ga0247046_1009213	Ga0247046_10092132	F083559	MSLLDKVYPAMNNAVQHQEVFEERLESNGSRGMDIIPHTVREFGVEARKPGKAWEAAFNGPIQSWADAEAGQTLYGVTVRLSRLKDPVSRELYSTNLLFYMPEEAMHGMHNVYEMAHRFPFTRIRGPRTPIPLCPARVGRLWYDANPEGVIMEDLRLTPAALPDGRPGFYVTGQGYRGKVMFPDGRFVHDVGVYGGYLDTQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNAAEDMHVESYKNSVKLPCLDGRKTLIGARSMSDTKQIAYFESLSVDGLSGFRMGGVIDGLNHALGLQIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDFPETLDAVHPGINEQYEGWVVWLMFDADGKPIIKACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYQTVMALLSSHRRN
Ga0247046_1010745	Ga0247046_10107451	F097562	VNRDAKSQSSLIALARTRRMQRALAHAYLHQNAPLPTLRLSLGFMMQTACTTEDVAGLGHRMSVLGVHEHEGCAYVLEELSPSDAPIVYRLFLAGARMGHLVPIHAWYEHDPSAAQIRARVHELELVRCTKTTTEAWMLSTRVVQRRALRVA
Ga0247046_1012848	Ga0247046_10128483	F069623	MKTTMEMNTKQSVFALQHIDSGEYICLLQEGVDYLACFSDGDSALEFRSLLGLHEHVDLCSTTMDRSPFSHFWLDGESVNLLHVPELAN
Ga0247046_1012977	Ga0247046_10129775	F023181	WLADVEDLTLSRIYPQNRTFMRLFVDAGRMIRANAYHLHPRGVVISLLQLVQLYPRHLRVIELCSEIGGQFVVTSNTHGVDRLEPPPEAKVERMPLQSKLLDVVTRHENRITEMLREHPERTPTSFETFEEVLASIARAHVVMARHRQKVGGLSRDELERLKGRPLTASEEAFLHEVQSREPG
Ga0247046_1014416	Ga0247046_10144164	F074174	ISGSRLLEILQSYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPMDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLGSIQADAVFIAPPGRNAHKKADARVWMWEAWWQGDPYLNIERYYRDTIFVQRTNEDSSYDRALGAVFAAAESSPLLVLQTTLQNAAHFKTVMGEFRPHVEIISPHADETYVVGHR
Ga0247046_1015911	Ga0247046_10159112	F083833	ETAAYLVGALRGDAEVGKAVSDVLASRKAKVLTALLKGLETDDETHAQRILQLIGALPDACEILCDAIESPAENVQVNAAVGIGLLGTKKAGSDGRKALETRRTGGFLRTREAAFKGLALLKELP
Ga0247046_1022422	Ga0247046_10224223	F006162	VTDATVIELVASFAFPDVAAAGRSAWVLPSIAITIGPLLLLLLLLLDHLVHIPRFRPAGRALTIGPCILVATMSGNALAAVTGITAGVLLLVTATAGFHELAGIWRDQRTR
Ga0247046_1024704	Ga0247046_10247041	F043461	PTATVVNLGASAIEMKRGGATGRELPRGEQLWKGQCTLVAGATIPYFGFGLKMFAFAATRQHAFHLRCGDAGLFEIMRNAPAAFRGDYFSDQVSDFMCDRVEISLDREAAIEAGGELLGRRSKVELALGTPITIVSLAP
Ga0247046_1031611	Ga0247046_10316111	F025512	LTLDRTVRLLQRAMDVPGLSLKLALLLVEYHIRRNQTARRSHTKTWMARHKKVKLLPL
Ga0247046_1032028	Ga0247046_10320281	F083559	SEPSYDDFHVMEVIPHTIHEFGVEARKAGKSWEAAFNGPIQSFEELATGQSAYAVTVRLSRLKDPVTRELFSTNLLFYMSHEEMSGMHNVYDMARKFPFTRIRGPRTLVPHCPPRDGRLWYDANPEGVIMEDLRLTPTTLPSGRLGFFVTGQGYRGKVTSPDGRFTHDVGVYGGYLDPLERPGQLELQHLFGGIEFAPYRAGGEENPLLTELGEDVWVKGIGENTLGLPSVSSYKNSVRLPSQDASQILIGARSMSETKQIAWFESRSADGLSGFRLGGVIDGLHRALGLQVWDRVHRVGLGSNFVDCPELGGFIGLIHIVMEKNNPAFPETLDPIHPGITEQYEGWLVWMTFDEKGVPMIKACVRAITPDDVPLGYCGAGELFDTKRVAFPMSLYRRGNALQ
Ga0247046_1033125	Ga0247046_10331251	F091561	SLPAVHRAILLWLFQDLVLWLIATDQIQAFRPCRI
Ga0247046_1036155	Ga0247046_10361552	F014637	ALAEPVTRAWWAPARVRALAELRVAIADALEGHGEKALDRVRHARAKLSPRLIQHQFSHYTEINLLTALGRTKEARAILEARGGVPQGEVLKLSYWIAEMHLWVAEPPARLDLDDGELHDRMRKGLSMTAGADLLLLCSWAYAFKGEHDEARFAWRQSKEREGSQRLEISMPKLAAWMEQYRARYPEVDEPEPDPIDEL
Ga0247046_1037749	Ga0247046_10377491	F092239	MRRLAFAALAIMLASQTGCPDDPYKAKTWTKKLTDPREAERAVTQLEQLGDPSAIPSLGDAWVAQGKPVRLLQVIISLARPLTPEQAKNSFVTDYESTGRPASWTAALPYLQKALTEVDEANPRSVDSAQKAADALGEARVDGGLDGLIDIASKPVTKKLVSAEVSAIRAIGKYDGEKAKAAGALQKIIDRDPPDHPRTAKDKEQGRALEEKYGLFLGVTGASINALADL
Ga0247046_1038423	Ga0247046_10384231	F079908	MAPLRREALLPNERGRGLGTVAVVCTMAGVASGLALATTLMAMQVADSMSVRNCPYRIVQDTQPIDVRADHGFLGVHYKFHDNGADILGVLPGTPAQSVDLH
Ga0247046_1039904	Ga0247046_10399041	F020721	VAPALHLSVPMPTNDFETITHGLVHAHGGVSMKLTQYGYPHDPYSDSETRKGHGAYHALSAESSIAMTDSGLRALGLSRSQVRSTSQFVDIKLKGGGVMTRRIDDRAPEKDMRTDLYQPHGFDR
Ga0247046_1044429	Ga0247046_10444292	F037822	VGGQAAEQIIAGVVLSERLAVTMYGAIHRAQFNGQRNLRGLVVDPKILAEETFRDTLTDATLLESVTALEHQNIVPTFTVESGGSDVVVVTRGSG
Ga0247046_1051821	Ga0247046_10518212	F023221	LLEAALEEPGLKLPRAVALVEYHIRRNRVAKASHDKTWKEKHEGVIFVRL
Ga0247046_1052462	Ga0247046_10524621	F091561	AFPPSGPRPSLPAAHRAILLWLFQDLVLWLIATDQIQAFRPRRI
Ga0247046_1060499	Ga0247046_10604991	F014178	RGASPTSPTMKDEIYIGGWTLPRLREKSQTERYEVWRRARALHSAEGNHLARAIERLGLPYAEPEALDGEHPLLDRLSEIVASKEARSAAIEATLDGLPAMAGVDVLLHEKLGEDYRLNPAAVPTAQGLVAELMESLGWERSGKKTLPLRCVAREGVFWKRG
Ga0247046_1062629	Ga0247046_10626292	F021141	PLRVRWLATDGVPGDGYKAQVTAIQLPEGVSLVMDASSILEQSHADVSGGLGAYVVTFQGMVGYAHDHPDRAHVDGFEDQEIDYVLEFIHEESGRVAIDNEDYKIVERPRGWAHKLNKRAASQPAPGS
Ga0247046_1068929	Ga0247046_10689291	F083019	VQNLHEPAKKGVRDELVLDTNVSDVKLTVRLDGGTVSSIVAIVQGHGARDLLTRAWGPPQIAHDSLGQPEVTWASESTGWKVKLDCLERNCLVEYTPYHVLTSEFFGSHVIPPGDLAKLRVGMKLADARALAPGIIASRTGIPTSVDGVREFVAIDDKAGVVRSIYLNLPPHAEDLVAEAWSEGWKASQLG

Showing 1 to 27 of 27 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029898: Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A1b

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences