Sample 3300029887

Overview

Basic Information
IMG/M Taxon OID	3300029887 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133139 \| Gp0283965 \| Ga0245331
Sample Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35999
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	216274212
Sequencing Scaffolds	11
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044554	Metagenome	154	N
F044555	Metagenome / Metatranscriptome	154	N
F050793	Metagenome	145	N
F052660	Metagenome	142	N
F055739	Metagenome	138	N
F055775	Metagenome	138	N
F064817	Metagenome	128	N
F067720	Metagenome	125	Y
F076190	Metagenome	118	Y
F090515	Metagenome	108	N
F094005	Metagenome / Metatranscriptome	106	N
F101191	Metagenome	102	N
F105375	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F032312

Metagenome / Metatranscriptome

180

F044554

Metagenome

154

F044555

Metagenome / Metatranscriptome

154

F050793

Metagenome

145

F052660

Metagenome

142

F055739

Metagenome

138

F055775

Metagenome

138

F064817

Metagenome

128

F067720

Metagenome

125

F076190

Metagenome

118

F090515

Metagenome

108

F094005

Metagenome / Metatranscriptome

106

F101191

Metagenome

102

F105375

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0245331_1000218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	100493	Open in IMG/M
Ga0245331_1000273	All Organisms → cellular organisms → Bacteria	85403	Open in IMG/M
Ga0245331_1000690	All Organisms → cellular organisms → Bacteria	39892	Open in IMG/M
Ga0245331_1001341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	19475	Open in IMG/M
Ga0245331_1002466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	10486	Open in IMG/M
Ga0245331_1003517	All Organisms → cellular organisms → Bacteria	7392	Open in IMG/M
Ga0245331_1006758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	4064	Open in IMG/M
Ga0245331_1007159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	3856	Open in IMG/M
Ga0245331_1007867	All Organisms → Viruses → Predicted Viral	3568	Open in IMG/M
Ga0245331_1011989	All Organisms → cellular organisms → Bacteria	2506	Open in IMG/M
Ga0245331_1017895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1787	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0245331_1000218

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

100493

Open in IMG/M

Ga0245331_1000273

All Organisms → cellular organisms → Bacteria

85403

Open in IMG/M

Ga0245331_1000690

All Organisms → cellular organisms → Bacteria

39892

Open in IMG/M

Ga0245331_1001341

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia

19475

Open in IMG/M

Ga0245331_1002466

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

10486

Open in IMG/M

Ga0245331_1003517

All Organisms → cellular organisms → Bacteria

7392

Open in IMG/M

Ga0245331_1006758

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

4064

Open in IMG/M

Ga0245331_1007159

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii

3856

Open in IMG/M

Ga0245331_1007867

All Organisms → Viruses → Predicted Viral

3568

Open in IMG/M

Ga0245331_1011989

All Organisms → cellular organisms → Bacteria

2506

Open in IMG/M

Ga0245331_1017895

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

1787

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0245331_1000218	Ga0245331_100021814	F055739	MMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDKNGQMPPEGKTIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQRVITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYAAVVDYVRASFLGGCVVLHCEAPNGTALPDVWRIYRNDEQNPAGEAGWVRASGYAGVPVGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0245331_1000273	Ga0245331_100027375	F050793	MRETGAIAPNDAEREKTMRKYEVDVPENVEMADIHAIQTRVKKHNLLTVALLIPLFAGYALRESSETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEIFPTLADVREYAAQEGYEPMDVDFEQMTDEEFQQFLDAHRI
Ga0245331_1000690	Ga0245331_100069015	F101191	LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYCWKEETHDAA
Ga0245331_1001341	Ga0245331_100134129	F067720	MASTTYCHIGDVTDMFAAQDHFRDVTKMVCARLRGLTKTYHFAVIGNMVRNAGQLPQPFWLGAACGGGSCGAARCAART
Ga0245331_1002466	Ga0245331_10024667	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAESILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0245331_1003517	Ga0245331_100351710	F094005	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKIIITRTTNLDGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDEETFEKVITLDKKLKKLIEKLNE
Ga0245331_1003517	Ga0245331_100351711	F032312	MARIKDYDEDLSAPKLLKERARDNKGRFIKERARDNKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVLLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS
Ga0245331_1006758	Ga0245331_10067586	F076190	VRTADGSITISAKNVFTAASRVSGRVWSLVRITVPNDLKYVRIRVEKPQNNSLYPYFQREPL
Ga0245331_1007159	Ga0245331_100715910	F044555	MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSHSQH
Ga0245331_1007159	Ga0245331_10071593	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKIVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKIPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPECITGVFTDIWYKCQGYMDTDHASLEEILELMQHNWLKEFELLVFKRNYDTDMLFFNHSLTYILDQTEEEGQRICIQNIIERNINQENQDENETV
Ga0245331_1007159	Ga0245331_10071595	F105375	MKNNETFQTTQHLDKLVTNLGLQIQGLFSLDLEEILDYSNNLMNLLVNVYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0245331_1007867	Ga0245331_10078672	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINADSGTVTAIALN
Ga0245331_1011989	Ga0245331_10119893	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLYDGILMGIALPIPSHRAKSHDFACWWPVAAGHSRSADALPGKSNS
Ga0245331_1017895	Ga0245331_10178952	F090515	VCQEGVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVSAFTALLCRHIGSIRTFLKS

Scaffold ID

Protein ID

Family

Sequence

Ga0245331_1000218

Ga0245331_100021814

F055739

MMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDKNGQMPPEGKTIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQRVITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYAAVVDYVRASFLGGCVVLHCEAPNGTALPDVWRIYRNDEQNPAGEAGWVRASGYAGVPVGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE

Ga0245331_1000273

Ga0245331_100027375

F050793

MRETGAIAPNDAEREKTMRKYEVDVPENVEMADIHAIQTRVKKHNLLTVALLIPLFAGYALRESSETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEIFPTLADVREYAAQEGYEPMDVDFEQMTDEEFQQFLDAHRI

Ga0245331_1000690

Ga0245331_100069015

F101191

LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYCWKEETHDAA

Ga0245331_1001341

Ga0245331_100134129

F067720

MASTTYCHIGDVTDMFAAQDHFRDVTKMVCARLRGLTKTYHFAVIGNMVRNAGQLPQPFWLGAACGGGSCGAARCAART

Ga0245331_1002466

Ga0245331_10024667

F044554

VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAESILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL

Ga0245331_1003517

Ga0245331_100351710

F094005

MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKIIITRTTNLDGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDEETFEKVITLDKKLKKLIEKLNE

Ga0245331_1003517

Ga0245331_100351711

F032312

MARIKDYDEDLSAPKLLKERARDNKGRFIKERARDNKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVLLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS

Ga0245331_1006758

Ga0245331_10067586

F076190

VRTADGSITISAKNVFTAASRVSGRVWSLVRITVPNDLKYVRIRVEKPQNNSLYPYFQREPL

Ga0245331_1007159

Ga0245331_100715910

F044555

MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSHSQH

Ga0245331_1007159

Ga0245331_10071593

F064817

MNIKNLFNRFRKREPELSYSLNLIYLEDTKIVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKIPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPECITGVFTDIWYKCQGYMDTDHASLEEILELMQHNWLKEFELLVFKRNYDTDMLFFNHSLTYILDQTEEEGQRICIQNIIERNINQENQDENETV

Ga0245331_1007159

Ga0245331_10071595

F105375

MKNNETFQTTQHLDKLVTNLGLQIQGLFSLDLEEILDYSNNLMNLLVNVYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV

Ga0245331_1007867

Ga0245331_10078672

F055775

MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINADSGTVTAIALN

Ga0245331_1011989

Ga0245331_10119893

F052660

MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLYDGILMGIALPIPSHRAKSHDFACWWPVAAGHSRSADALPGKSNS

Ga0245331_1017895

Ga0245331_10178952

F090515

VCQEGVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVSAFTALLCRHIGSIRTFLKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029887: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35999

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences