NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029881

3300029881: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37349



Overview

Basic Information
IMG/M Taxon OID3300029881 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133139 | Gp0283941 | Ga0245307
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37349
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size259887108
Sequencing Scaffolds17
Novel Protein Genes25
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039147Metagenome164N
F041208Metagenome160N
F042095Metagenome159N
F042936Metagenome157N
F044554Metagenome154N
F050793Metagenome145N
F051934Metagenome143N
F051936Metagenome143N
F055715Metagenome138N
F055739Metagenome138N
F058154Metagenome135N
F058555Metagenome135N
F064725Metagenome128N
F073573Metagenome120N
F076653Metagenome118N
F078004Metagenome117N
F078006Metagenome117N
F078822Metagenome116N
F080673Metagenome115N
F085718Metagenome111N
F087213Metagenome110N
F089005Metagenome109N
F097172Metagenome / Metatranscriptome104Y
F097493Metagenome104Y
F106193Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245307_1000142All Organisms → Viruses → Duplodnaviria → Heunggongvirae151092Open in IMG/M
Ga0245307_1000270All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis103801Open in IMG/M
Ga0245307_1000828All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales43776Open in IMG/M
Ga0245307_1000935All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales39227Open in IMG/M
Ga0245307_1001240All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales30638Open in IMG/M
Ga0245307_1002059All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales18775Open in IMG/M
Ga0245307_1002944All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii13017Open in IMG/M
Ga0245307_1003497All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales10941Open in IMG/M
Ga0245307_1003749All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales10188Open in IMG/M
Ga0245307_1003886All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia9770Open in IMG/M
Ga0245307_1005440All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae6849Open in IMG/M
Ga0245307_1005993All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6152Open in IMG/M
Ga0245307_1006995All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis5229Open in IMG/M
Ga0245307_1009399All Organisms → cellular organisms → Bacteria3807Open in IMG/M
Ga0245307_1010462All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium3385Open in IMG/M
Ga0245307_1010501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3376Open in IMG/M
Ga0245307_1011926All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2953Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245307_1000142Ga0245307_100014212F106193VGCNTCKEKALRAERERIERSMMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSIYIKP
Ga0245307_1000142Ga0245307_1000142143F076653MTLSDKYFGWKDIFFDRFVHCCNEKSGQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFERMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK
Ga0245307_1000142Ga0245307_1000142198F064725VIYSNGYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIVYRATPKDEDGLPYIPETDLGYLEDYVETYIKMKIFENAAVNGLIQGAGEAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI
Ga0245307_1000142Ga0245307_100014221F042095MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLKLSSCYLDRYIKEFNDLPKLTSLNITSGPPDMWNYFDINTLPFFEVDKINPNITDFAFLNDWMNGGRRTGWNDDNMSGRGLEHLTGFIAANSNSLRMDKLPDYIYEMRAITWFNVNASTPSQKKSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGLSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0245307_1000142Ga0245307_100014240F058555METKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG
Ga0245307_1000142Ga0245307_100014273F080673MKLQDEALLYLRDNITKGEAYYILTTDKEMIEILISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASCIGVNMYFRRQDVNAILNNINREKVMGYPYIAIQLDNIQTIEKRRVIFDITGHRMDDNKERIDFMFVYFMARLCV
Ga0245307_1000142Ga0245307_100014278F078006MIRGRFPAPWRNLNISSMEDNILKRAAAELKEAGCRVFAWQDDFYNRSWNKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCRVKEEATFDLATALDVLNEPLPMWCKSHGVYPEQYKDIDGWYNNNNHNKKIFKEI
Ga0245307_1000142Ga0245307_100014280F085718MIIEFDFEIYKRGDYDKVYLRNGKEVRILCDNGKGNCPIVAMFDNNSGKNYTILRYDKTGRRYIDQQSNLDLMLSVKEWEPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV
Ga0245307_1000270Ga0245307_100027030F051936MKQEGTGLCPVLPLALRGKAFGFSVLQEHAVMTPVISIFFATLIIRYLSIHISIKK
Ga0245307_1000828Ga0245307_100082813F055739MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRSIGLSRMMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMTAKTDDVLAVEVRICGECDGQMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDETGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQHMITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVQPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0245307_1000935Ga0245307_100093513F041208MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENANLHPAAAQTQRDILLLMRDNLAEKGVDVTQTFFAVQADDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGVRGRNVIPLESITMLTRIRYARTDGTFAESWVSSDTLTENDATPAAPKREPIPTLESYQITLNGTAYTAFAINKVEKGYDAFADIAGTQMAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFAIPQRDMADDAYEVEVDDKDGKVTGLWGPQDGNG
Ga0245307_1001240Ga0245307_10012406F073573MPTIVSFYQRFPNEAPPLNLSAFDHTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRTGDTTYAILPDNVQQYTKRGETDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIRRFCMDCEESAITYQPAFLWYKDYCTKA
Ga0245307_1002059Ga0245307_10020596F087213MKKFFSLFLAVLLIFSCWTAATAESIDAVSGAPLDNDIEIVYKEHFDDMVTHYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADAALDARLQAILAACGLNPEDYDISVIRNLGGMIEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
Ga0245307_1002944Ga0245307_10029441F089005LILKAEKTFKKTFKKCLTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNY
Ga0245307_1003497Ga0245307_10034975F039147MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYAMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNVSYRDLETDKVYTYPASLTRMYVCGSVLAISVMQENGIKVVLVDLADGAIREIADESLEAMYEWADGELLLWRLEGSTNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTMNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ
Ga0245307_1003749Ga0245307_10037497F058154MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGVFVRVPVPAQSRLRYQPYLLLPEDASRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVATLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
Ga0245307_1003886Ga0245307_10038868F097172MKKNVFKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHLEGCDKKGYVMDGFSKAAFYKDLNSLPAVKTGKTTINVPAVTSSVKSISKEKGNPIYESFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMADGDLCQISKTGKKYGLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEYDYNDYTDFVNKYPVDKIKFTTKLKKGHTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK
Ga0245307_1005440Ga0245307_10054402F042936GKGWVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0245307_1005993Ga0245307_10059937F097493MYKFYVKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTDITLEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTQDEINAMLMLQIAELKAGVDGE
Ga0245307_1006995Ga0245307_10069953F044554VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL
Ga0245307_1009399Ga0245307_10093994F078822AFLKAFHPHAVRFPAAFLLVHRFYLVLEELLSCATAYL
Ga0245307_1010462Ga0245307_10104623F051934MGLMRRLAAAALAAVLVLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVLASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGVRQAIADLAAQENDGRLENTALIACAEEIARLSEDDRALYYYIEAFGLESGTDANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSYADADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNADVSFSLPVSYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTITIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWL
Ga0245307_1010501Ga0245307_10105014F050793AKWNDRTPEGKRHEQLVQANLEIVLFYHAFSRRARGIVIRLTSGGGGGTMRETGAIAPNDAEREKTMRKCEVLVPENVEMADIHAIQTRIKKHNLLTVALLIPLFAGYALRESSETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYATQEGYEPMDVDFGTMTDEEFQQFLDAHRI
Ga0245307_1011926Ga0245307_10119262F055715XXXTKANEFDKINELLIERTAKKFERASKKRLKKFLTNEKLYDKINELIQVGTAEILDN
Ga0245307_1069110Ga0245307_10691101F078004MLRHALVIAVINTFYRLTVDADRMAWMRQGAAERIPPLSLLRKAFTAGSVTVAGMLASHHDITLAAHTILIIGTIFHNTFQI

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