Sample 3300029878

Overview

Basic Information
IMG/M Taxon OID	3300029878 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133139 \| Gp0283961 \| Ga0245327
Sample Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35366
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	177064436
Sequencing Scaffolds	9
Novel Protein Genes	15
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides neonati	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F044555	Metagenome / Metatranscriptome	154	N
F051936	Metagenome	143	N
F055775	Metagenome	138	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F087336	Metagenome	110	N
F088914	Metagenome	109	N
F089054	Metagenome	109	N
F090513	Metagenome	108	N
F092228	Metagenome	107	N
F101356	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F032286

Metagenome / Metatranscriptome

180

F044555

Metagenome / Metatranscriptome

154

F051936

Metagenome

143

F055775

Metagenome

138

F064817

Metagenome

128

F080163

Metagenome

115

F087336

Metagenome

110

F088914

Metagenome

109

F089054

Metagenome

109

F090513

Metagenome

108

F092228

Metagenome

107

F101356

Metagenome

102

F101357

Metagenome / Metatranscriptome

102

F105375

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0245327_100013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	339142	Open in IMG/M
Ga0245327_100251	Not Available	89229	Open in IMG/M
Ga0245327_100626	Not Available	42417	Open in IMG/M
Ga0245327_100852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	32810	Open in IMG/M
Ga0245327_101326	Not Available	21457	Open in IMG/M
Ga0245327_101508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	18575	Open in IMG/M
Ga0245327_102127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	13168	Open in IMG/M
Ga0245327_103438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7734	Open in IMG/M
Ga0245327_107343	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides neonati	3339	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0245327_100013

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

339142

Open in IMG/M

Ga0245327_100251

Not Available

89229

Open in IMG/M

Ga0245327_100626

Not Available

42417

Open in IMG/M

Ga0245327_100852

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

32810

Open in IMG/M

Ga0245327_101326

Not Available

21457

Open in IMG/M

Ga0245327_101508

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

18575

Open in IMG/M

Ga0245327_102127

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

13168

Open in IMG/M

Ga0245327_103438

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

7734

Open in IMG/M

Ga0245327_107343

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides neonati

3339

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0245327_100013	Ga0245327_100013128	F092228	MKKKCTLVLISVLTVACVVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAVADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGSKLCCLDTTTNTRKILDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0245327_100251	Ga0245327_100251101	F105375	MKNNEIFQTTQHLDKLITNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0245327_100251	Ga0245327_100251104	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKDDFHNYSNTSNTHYEGGKFPSMLTIQLFNLEF
Ga0245327_100251	Ga0245327_100251109	F044555	MKTITRITINQNGNQILTCKVCKDTNNILFMSNEEILELISGLDYMDNLPTVPDLEKPIEIQITSTREIPIEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0245327_100251	Ga0245327_1002512	F080163	MKTIKFLQESFETKERFQQEISFKYSYNQNTVESVDFRINRHNIKDFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYNHRDLSFSTKLESEVLDSEIELLQEKLDLIREEICKIMGINPDLQKKGHEENYIFNLNIDSDNQIGFLLQATEL
Ga0245327_100251	Ga0245327_10025199	F064817	MNIKNLFNRFRKWEPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQKNQDENETI
Ga0245327_100626	Ga0245327_1006266	F055775	MAQIAQQDNLVIEVTTTVAALDDDTKKKLIECIEGGTIADVILVTKEAEKKISHARVVRWLVDTTKDSPKYTIDIINADSGAVEAIALN
Ga0245327_100852	Ga0245327_10085213	F087336	MHCLLRGMVAELEQVSKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0245327_101326	Ga0245327_1013264	F089054	MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPNQEINKNHLHSKHIRLRLREILQINLSDITIIDIIPLP
Ga0245327_101508	Ga0245327_10150813	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPRENRKNPGKFIVFSAWYAAKALEMDVK
Ga0245327_102127	Ga0245327_10212714	F090513	MEWKLLHIKHILYMRPFGALKITPQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0245327_103438	Ga0245327_10343810	F032286	MVKWVCQIVTPIRHRALVFNTRLFAETAADDVLVTGGTFRFCRLVCLCVKRRNIMLNDKRRSLLNSALFRTDNRTGQKTFSPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIEGRTPLCSQNSPFRNGLKTCA
Ga0245327_107343	Ga0245327_1073431	F051936	KAFGFSVLQEHAVMTPVISISFLVLIIRYLSIHISIKK
Ga0245327_123113	Ga0245327_1231132	F101356	MDVGELIPVVTPGKDGLSNSKFATTKIKSEGKRSILLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0245327_128985	Ga0245327_1289852	F101356	MPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ

Scaffold ID

Protein ID

Family

Sequence

Ga0245327_100013

Ga0245327_100013128

F092228

MKKKCTLVLISVLTVACVVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAVADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGSKLCCLDTTTNTRKILDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS

Ga0245327_100251

Ga0245327_100251101

F105375

MKNNEIFQTTQHLDKLITNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV

Ga0245327_100251

Ga0245327_100251104

F101357

MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKDDFHNYSNTSNTHYEGGKFPSMLTIQLFNLEF

Ga0245327_100251

Ga0245327_100251109

F044555

MKTITRITINQNGNQILTCKVCKDTNNILFMSNEEILELISGLDYMDNLPTVPDLEKPIEIQITSTREIPIEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR

Ga0245327_100251

Ga0245327_1002512

F080163

MKTIKFLQESFETKERFQQEISFKYSYNQNTVESVDFRINRHNIKDFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYNHRDLSFSTKLESEVLDSEIELLQEKLDLIREEICKIMGINPDLQKKGHEENYIFNLNIDSDNQIGFLLQATEL

Ga0245327_100251

Ga0245327_10025199

F064817

MNIKNLFNRFRKWEPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQKNQDENETI

Ga0245327_100626

Ga0245327_1006266

F055775

MAQIAQQDNLVIEVTTTVAALDDDTKKKLIECIEGGTIADVILVTKEAEKKISHARVVRWLVDTTKDSPKYTIDIINADSGAVEAIALN

Ga0245327_100852

Ga0245327_10085213

F087336

MHCLLRGMVAELEQVSKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP

Ga0245327_101326

Ga0245327_1013264

F089054

MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPNQEINKNHLHSKHIRLRLREILQINLSDITIIDIIPLP

Ga0245327_101508

Ga0245327_10150813

F088914

VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPRENRKNPGKFIVFSAWYAAKALEMDVK

Ga0245327_102127

Ga0245327_10212714

F090513

MEWKLLHIKHILYMRPFGALKITPQSVGNKNGTKAVLQGWAAAFVPYMLSFT

Ga0245327_103438

Ga0245327_10343810

F032286

MVKWVCQIVTPIRHRALVFNTRLFAETAADDVLVTGGTFRFCRLVCLCVKRRNIMLNDKRRSLLNSALFRTDNRTGQKTFSPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIEGRTPLCSQNSPFRNGLKTCA

Ga0245327_107343

Ga0245327_1073431

F051936

KAFGFSVLQEHAVMTPVISISFLVLIIRYLSIHISIKK

Ga0245327_123113

Ga0245327_1231132

F101356

MDVGELIPVVTPGKDGLSNSKFATTKIKSEGKRSILLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ

Ga0245327_128985

Ga0245327_1289852

F101356

MPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029878: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35366

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences