3300029855: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37270

Overview

Basic Information

• IMG/M Taxon OID: 3300029855
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283930 | Ga0245295
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37270
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 230305402
• Sequencing Scaffolds: 12
• Novel Protein Genes: 29
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039147	Metagenome	164	N
F042095	Metagenome	159	N
F043413	Metagenome	156	N
F050794	Metagenome	145	N
F053097	Metagenome / Metatranscriptome	141	Y
F055739	Metagenome	138	N
F056682	Metagenome	137	Y
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F073573	Metagenome	120	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F081354	Metagenome	114	Y
F087334	Metagenome	110	N
F089053	Metagenome	109	Y
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F090513	Metagenome	108	N
F093883	Metagenome	106	N
F099451	Metagenome	103	N
F101192	Metagenome	102	N
F101193	Metagenome	102	N
F102166	Metagenome	102	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245295_1000114	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	153135
Ga0245295_1000199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	109662
Ga0245295_1000276	All Organisms → Viruses	90531
Ga0245295_1000332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	79992
Ga0245295_1000379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	72481
Ga0245295_1000405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	68496
Ga0245295_1000442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	64054
Ga0245295_1001093	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	29630
Ga0245295_1002468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	13037
Ga0245295_1012533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	2237
Ga0245295_1020276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1439
Ga0245295_1043614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	736

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245295_1000114	Ga0245295_1000114111	F106193	VGCNTCKEKALKAERERIERSMMNHSSSTAVSDMEYASRRTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILNGRAEHIKP
Ga0245295_1000114	Ga0245295_1000114116	F075481	MKRLRISLKAVFCLGLSLSLSSCGSRRQVSEASIDSRLISRIETMINEVIDRKMVEIKTSDLNADIVITERKFDTDKDIDPATGERPVSSVTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
Ga0245295_1000114	Ga0245295_1000114117	F089590	MDSRGMIDKVGALWNIAIVYGTSCWAYFQPVHHLLEVLLVVLLANFIARLIQSARRWKVRRSRKRRFSLYRWFREVRLVGILKEFFLSCFIVMTLCVIYKTLSIEEDDASAILVVTKYGVYAALVAYVMLFLNTIGEAFPDTYIVKVFKSIFNRVNILKLFGSAKSLPDEAFDDIKKIADEEVKDKS
Ga0245295_1000114	Ga0245295_1000114120	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNSYVEFSSRKPGMANVDWGDGIKEQFPMTKVQGKDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSNTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLDLSSCYLDRYIKEFNDLPKLTSLNITLGPSDMWNYFDINTLPFFEVDKINPNITGFDFLNDWMNGERRTGWNDDNMSGRGLEHLTSFIAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVAAYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0245295_1000114	Ga0245295_1000114128	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVIWEAKNENVHELLGDDNNKPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNESQLPTG
Ga0245295_1000114	Ga0245295_1000114129	F089592	MKDILKSKEVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKTKKVEDVKKKEDVGEGDKEE
Ga0245295_1000114	Ga0245295_1000114135	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWMAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVSLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKGIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDIKANATGKTKAD
Ga0245295_1000114	Ga0245295_1000114141	F058555	METKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVMEKKCKQVVAYLTIINVQKHVFLRNRMREGYRDRIEINTDDFIDILSDGIAYFCYRHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSNERRNMANKSRKFDRVRILSKIIFRVRTRNVHHIYKVTKRKTIKFNVAYLLNELNKKLAGIGMHEISQSTIYRYISMFLGMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGKIMHIIIAEDFIKDVFLGVKGSEMSKAG
Ga0245295_1000114	Ga0245295_1000114156	F102167	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMDKLRMLIGNAIMAVGYRNNPLTGDGNTAIK
Ga0245295_1000114	Ga0245295_1000114165	F057001	MISKEINKVQNEVKKSNEKTLTGAVKAWCNLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKNEQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNER
Ga0245295_1000114	Ga0245295_100011437	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYECEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYSKGFKERLAKRFNRSLSGGGEPFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK
Ga0245295_1000114	Ga0245295_10001148	F078005	MKKSEFVKELEKIIDMIKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMNLTVEANTMASMNDRTFACLMSKVYKQKFTKAITMSEDDDDEDN
Ga0245295_1000114	Ga0245295_100011481	F050794	MAPVGTLYIMQLDSFLHRKIMQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRSQAFDYMTEFNERLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMKEAEKLELDTDAIKDMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYSYISSI
Ga0245295_1000114	Ga0245295_100011484	F077313	MSKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQHPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEEGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGTRARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQLQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0245295_1000114	Ga0245295_100011492	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCTADKYWDKYAWDNYDITISGNTMYTGFDGFIYIVYRATPKDEDGLPYIPETDLGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI
Ga0245295_1000199	Ga0245295_100019935	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYAMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNVSYRDLETDKVYTYPASLTRMYVCGSVLAISVMQENGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSPNEISRSSGTYALSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQGSNGASNTALQHFAEENPEVILAQETLAKSAVNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRNGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTMNADLVGKLLAQVIADQEATAKCVLLADYDEPIEDSYYLTRVNDYEKTLTELRRQQENAPAWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEEADKLIEGLEQ
Ga0245295_1000276	Ga0245295_100027625	F053097	MFDIKGNKIVLSTDDLAIPPFKEFYNNAKDKEQAKKEIEYVIWRYKWNTPYESYPENERSQRVSKDLFGTTTYEPDDKVKELIKRFNEFQETPSTRLLGASKTAAEGVM
Ga0245295_1000332	Ga0245295_100033253	F101192	MTYRGWLLVDIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQLARTAPTSITPCGEDTIRRWVSERYQIALRFNRYDVCLGVEEEIDG
Ga0245295_1000332	Ga0245295_100033255	F073573	MPTIVSFYQRFPNEAPPLNLSAFDRTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMPFQVRRMELRTGDTTYAILPDNVQQYTKRGDTDGGFLETMTIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIRRFCMDCEESAITYQPAFLWYKDYCTKA
Ga0245295_1000379	Ga0245295_100037913	F087334	MASRYQFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHP
Ga0245295_1000405	Ga0245295_100040552	F101193	MARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVYIFFRNSMNDAIGWFAAWLLFMLLLFLPQYIYVRFFMPYETLSEDETRKFHELQKK
Ga0245295_1000442	Ga0245295_100044217	F102166	MKKLVSLLLVLALALVPTLSLADDDAAYQNLYNMLLDELKSVDLEMTADEESYRIYLGSALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV
Ga0245295_1000442	Ga0245295_100044250	F055739	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRSIGLSRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECNGKMYRFDPLDVYGGDFQSLLMLPDLGGTFDGEKYAAEGILLDETGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQHMITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVADVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0245295_1000442	Ga0245295_100044252	F043413	MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMEVTAECEGRAYTLEIEGCGGGDFMSGMFLPDGTDSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWKVEYLPDAQYQELLAGGADTLEAYVQNNWRKHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE
Ga0245295_1001093	Ga0245295_100109349	F099451	MEIKNVGQLRKIIENLSDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSNE
Ga0245295_1002468	Ga0245295_100246813	F090513	MAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSIGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0245295_1012533	Ga0245295_10125333	F056682	MKMQSRAGKVANQSIAQGETNSTSFRAFPSKNRVSFPIQELGKIHENQEVL
Ga0245295_1020276	Ga0245295_10202763	F081354	VPFLSAKKALDLVRENQQSSAHNFVKDFPLFFPEFRCSSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELSKNFENKKLPNPLR
Ga0245295_1043614	Ga0245295_10436141	F089053	LCRAKRALFGFDVKFGCVVDECRPAKGCIRKWLYIFANGQLKLSTAEEVNVKNMEVFL