3300029826: Marine sediment microbial communities from Jimmy Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - N0247

Overview

Basic Information

• IMG/M Taxon OID: 3300029826
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121308 | Gp0151791 | Ga0134619
• Sample Name: Marine sediment microbial communities from Jimmy Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - N0247
• Sequencing Status: Permanent Draft
• Sequencing Center: Battelle Memorial Institute
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 299701242
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From New Orleans, Usa To Study Impact Of Deep Water Horizon Explosion
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From New Orleans, Usa To Study Impact Of Deep Water Horizon Explosion

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Bay Jimmy
• Coordinates
  • Lat. (^o): 29.44
  • Long. (^o): -89.903
  • Alt. (m): N/A
  • Depth (m): .02 to .04

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005815	Metagenome / Metatranscriptome	389	Y
F010017	Metagenome / Metatranscriptome	309	Y
F024682	Metagenome / Metatranscriptome	205	Y
F025315	Metagenome	202	Y
F025653	Metagenome / Metatranscriptome	200	Y
F025922	Metagenome / Metatranscriptome	199	Y
F026597	Metagenome	197	Y
F029285	Metagenome / Metatranscriptome	189	Y
F039402	Metagenome / Metatranscriptome	164	Y
F044014	Metagenome	155	Y
F059979	Metagenome / Metatranscriptome	133	Y
F075038	Metagenome / Metatranscriptome	119	Y
F088355	Metagenome / Metatranscriptome	109	Y
F089490	Metagenome / Metatranscriptome	109	Y
F092304	Metagenome	107	Y
F101126	Metagenome / Metatranscriptome	102	Y
F102142	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134619_1000066	Not Available	48186
Ga0134619_1001019	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	9470
Ga0134619_1001612	All Organisms → cellular organisms → Bacteria → Proteobacteria	6850
Ga0134619_1007928	All Organisms → cellular organisms → Bacteria	2588
Ga0134619_1015853	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1749
Ga0134619_1034565	Not Available	1132
Ga0134619_1035275	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1119
Ga0134619_1038277	All Organisms → cellular organisms → Archaea	1070
Ga0134619_1068148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	774
Ga0134619_1068177	Not Available	774
Ga0134619_1070430	Not Available	760
Ga0134619_1075212	Not Available	733
Ga0134619_1084015	All Organisms → cellular organisms → Bacteria → Terrabacteria group	690
Ga0134619_1121473	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	567
Ga0134619_1122432	Not Available	565
Ga0134619_1140272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134619_1000066	Ga0134619_100006656	F039402	MSLTDYSDLEGQIKDAPEPKTLPRGAEVKARIISVRDGVSDKNGAQWYSVVFDVPSDPMVIEFNDFFWDLADRDKLTEKEFQRSLRKFKLFAEAIGLDYSRPFSWADDLVGMECWVILGVKKSDEYGDQNTVSKYITGK
Ga0134619_1000066	Ga0134619_100006669	F044014	MSDEYKPRFIFEITEAQKERADRLLATYGLRKAVFSHILDDVLDILEEFGGASLGLLITGKCKPRDIIPTMKNASRGGELSNG
Ga0134619_1001019	Ga0134619_100101912	F101126	MARFIVDLWLDGYDTEEEMIEACEEFIYEQLNFTASSVKIERVEE
Ga0134619_1001612	Ga0134619_10016129	F029285	MKNQADYSRYDCPFSHIEKECGHKLMGPEGYKNAYGVWCQCGFRGPAFCLDPEELKLKKKQEKRSATMDFYKRAGR
Ga0134619_1007928	Ga0134619_10079284	F026597	MNLFERNRFLVSVSLAFLIVVLIGVTISSFSPSKKSEYFQELKNIYNTVSNYDKEINNWEIAKNTVVDLNYWYDFIPRYDAISDEDKDVLLMQNEVRDLAIKQQIRSLPEIRKYYGEYLGNKLESRGYKVTILNDERNKIIVFTHDSFMKRKALEDFHVTVVNDLRTLGFKQIRYKWFELEKLKEERYIHYNFKDLNDNEYRRFNISALRD
Ga0134619_1015853	Ga0134619_10158532	F010017	NCMNHRKHKQAQNLKKKVYTPEGYIKDPPDAVCPHCGKKQKPCSYVNSLSRAWSRDACKKKYPQIFLVDMNLRM
Ga0134619_1034565	Ga0134619_10345652	F075038	MSKTWELQKGNILVVEDANTASLVIVVKDLKKKEDKIVALEEIIQKMRND
Ga0134619_1035275	Ga0134619_10352752	F024682	LNAEDELISKLKKEIGKTLPAMFAGMAESMLENNKDVIIAWLKENKDLVKQVIES
Ga0134619_1038277	Ga0134619_10382772	F092304	MLKEEYVRQQLECEVRESLEHKIALRREAPLIGLVAFSVALWGSKLFTAVSPGSSVVFQLWGFNVHLHHFNYGFVLLVVGLLLTFFEGPWFVRVQHSLFGVGLGFIVDEYWLLLIFDDHASTYFGPESQYISTMIGLFITIIYAVIAIGVFFKTRRERKIWRQLYEAVKSGKIEFLLKP
Ga0134619_1068148	Ga0134619_10681482	F005815	MTMNTTRLITYWNAGEAATVIDFLDAIRDVLWETYGEQITQMHREACEESSRDENQCKFEFDDDITF
Ga0134619_1068177	Ga0134619_10681772	F025653	MSDPIKYFETQLKNLCLAELQAYKKRLDESITQKIAQTAPNEQIAPLILYRGIVEHEMKTRMGQK
Ga0134619_1070430	Ga0134619_10704301	F102142	GILAVVITVIPFEQFVAQFAGLSYDEFRGGMPTLYLLPLFLIYAAIGLVLARMKQNLNIGRRGAFLIIFAFHYIIVSFLGNIEGLIYLPDFTFLSAMTSGLILAGAVVGLIFYLWKQDENPDAKPGEQIKSHFSSRSVLSWVWRFFLVWISFYIVTMIIGIVAMPFNGSYLDDPMNTLGMVVPSMGTLFVITQLRSLIYVLVILPFIIFWNSSKRASFLYVALILIIQYPLLGDGLAYFWPAMYRLVDGIVL
Ga0134619_1075212	Ga0134619_10752122	F089490	MYHLMKSQKFTLDHLVSGLMSSYRQTEIGRFQRFSAALGACEVANKKGRSRYYVLNESGQEYYSGTWID
Ga0134619_1084015	Ga0134619_10840151	F025315	MQSYPVYTYEILLVLVMPLLILYLKGNWPLRKVIPPLVVIPILWYFTYAPLHELSHAAGAYLVGGKVIAWKLIPRFXXXXGEFARAWLTPSRITQRWQILTMDTFPYLLDVVCFIVAIFVFRQVSFNKNPFGIGLAFMLLCLRPAMDFVFEPIAFLSGFRGDLYNIQQIVGPFAIWSFILISIGLAIYSISSTLSRLVGFSKQ
Ga0134619_1121473	Ga0134619_11214732	F059979	MKSFLFIVAQLTLVTLVYAFAYRAGYRSAQSKAISVVKKFADPVTCLLDSLNASIDEAA
Ga0134619_1122432	Ga0134619_11224321	F025922	DMARNRIIYASQSVWCNGEVLYRVQSLGSTTTFTSEDIFELGHLDIVDVVDDVPAVAVTLNTNDFGDVKTLATLAQVAPAKAAMNASATSTTGNLVVVSGTQLVETSTYLHGVALADFSVVCGNLTGVTLWAPVQEECSLGTLANNIDQTLFMDEVYVNSLEFGYTTGANATENYGAETDNKMWLLND
Ga0134619_1140272	Ga0134619_11402722	F088355	MKNLTNKISTFVGQKGQLLLVILSIALFVLAAGAPNDTIGIGR