3300029774: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 038_10_29_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029774
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282929 | Ga0243768
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 038_10_29_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 197816815
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F056309	Metagenome	137	N
F056682	Metagenome	137	Y
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243768_101002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	30101
Ga0243768_124712	All Organisms → cellular organisms → Bacteria	1065
Ga0243768_129551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	909
Ga0243768_138935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	707

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243768_101002	Ga0243768_1010021	F056309	VKGTKRTCLRRTPSLNVVPLLLGDSDSLSVSYGMEPEQEALSIVFFKD
Ga0243768_124712	Ga0243768_1247121	F029444	GFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKVSQIFGRRFVGFDS
Ga0243768_129551	Ga0243768_1295511	F056682	KQNTMKMQSRAGKVANQSVGQSEMYPTSFWAFPSKNRSTFPIQKLGKIHEN
Ga0243768_138935	Ga0243768_1389351	F092227	RGQRRPQGEMNEQKRKRILRVGCLLLAGVFLLSVLGSVILMLLV