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Sample 3300029771
3300029771: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_30_stool_1
Overview
Basic Information
IMG/M Taxon OID 3300029771 Open in IMG/M GOLD Reference Gs0133117 | Gp0282962 | Ga0243801 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_30_stool_1 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 204642081 Sequencing Scaffolds 3 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → unclassified Blautia → Blautia sp. KLE 1732 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F056309 Metagenome 137 N F067844 Metagenome 125 N F097172 Metagenome / Metatranscriptome 104 Y F101356 Metagenome 102 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243801_100565 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena 61204 Open in IMG/M Ga0243801_100771 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 46422 Open in IMG/M Ga0243801_106236 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → unclassified Blautia → Blautia sp. KLE 1732 3863 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243801_100565 Ga0243801_1005651 F056309 RTCLRRMPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD Ga0243801_100771 Ga0243801_1007714 F097172 MKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLYENNYLARLRTILDNYKEEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQIYVFVIDNRGMAKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK Ga0243801_106236 Ga0243801_1062361 F067844 HMNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSVGAAVITPQHRSYRVPQGSPQVFGGP Ga0243801_112742 Ga0243801_1127425 F101356 DVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSDSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
