3300029759: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_11_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029759
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283004 | Ga0243843
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_11_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 190324222
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F059106	Metagenome	134	N
F067844	Metagenome	125	N
F071325	Metagenome	122	N
F078822	Metagenome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243843_100324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	90594
Ga0243843_100950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	37350
Ga0243843_101099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	31777
Ga0243843_102008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	15486
Ga0243843_113694	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1455
Ga0243843_115015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1304

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243843_100324	Ga0243843_10032490	F059106	SVWKIRVILLQIFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0243843_100950	Ga0243843_10095038	F071325	RFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLVFEELLSCAAAYL
Ga0243843_101099	Ga0243843_10109928	F071325	KFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPATFLLVHRFYLAFEELLSCATAYL
Ga0243843_102008	Ga0243843_1020081	F078822	VLFVKHFFDIFLSFPNAFLKAFLPHAVRFPAAFLLVHRFYLVFEELLSCATAYL
Ga0243843_113694	Ga0243843_1136943	F051936	VLFFPLALRGKAFGFSVLQKHAVMTSVISIFFATLIIRYLSIHISIKK
Ga0243843_115015	Ga0243843_1150154	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYR