| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029749 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133139 | Gp0283838 | Ga0245202 |
| Sample Name | Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37299R1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 251407050 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 18 |
| Associated Families | 18 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | United Kingdom: London | |||||||
| Coordinates | Lat. (o) | 51.5 | Long. (o) | -0.12 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026489 | Metagenome | 197 | N |
| F032286 | Metagenome / Metatranscriptome | 180 | Y |
| F041208 | Metagenome | 160 | N |
| F045105 | Metagenome | 153 | N |
| F047125 | Metagenome / Metatranscriptome | 150 | N |
| F051935 | Metagenome | 143 | N |
| F051936 | Metagenome | 143 | N |
| F067844 | Metagenome | 125 | N |
| F074964 | Metagenome | 119 | N |
| F081354 | Metagenome | 114 | Y |
| F087335 | Metagenome | 110 | N |
| F088920 | Metagenome | 109 | Y |
| F090484 | Metagenome | 108 | N |
| F090515 | Metagenome | 108 | N |
| F096287 | Metagenome | 105 | N |
| F099269 | Metagenome | 103 | N |
| F099406 | Metagenome | 103 | N |
| F105374 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0245202_1000143 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 146205 | Open in IMG/M |
| Ga0245202_1000204 | Not Available | 116696 | Open in IMG/M |
| Ga0245202_1000352 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 79314 | Open in IMG/M |
| Ga0245202_1000635 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 46724 | Open in IMG/M |
| Ga0245202_1001254 | Not Available | 25587 | Open in IMG/M |
| Ga0245202_1003886 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 9261 | Open in IMG/M |
| Ga0245202_1006728 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 5525 | Open in IMG/M |
| Ga0245202_1008250 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4530 | Open in IMG/M |
| Ga0245202_1008854 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 4239 | Open in IMG/M |
| Ga0245202_1011079 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 3432 | Open in IMG/M |
| Ga0245202_1011615 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3274 | Open in IMG/M |
| Ga0245202_1014552 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2611 | Open in IMG/M |
| Ga0245202_1020285 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides | 1883 | Open in IMG/M |
| Ga0245202_1035481 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium | 1053 | Open in IMG/M |
| Ga0245202_1038192 | Not Available | 970 | Open in IMG/M |
| Ga0245202_1048829 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella | 732 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0245202_1000143 | Ga0245202_1000143108 | F096287 | MQRIQKRRAGQRQTQNALIGLLSAVSMTRVGLTQLLPLCGSAAWWLSAACMLPGLCVYGALRLLLRHTHTRTLTDCARKLLGNFGGILIMLALTLPLLLDGIASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNHDGLPRGVYLLRHVLLVAAAIIAINALLDAHPDGIVPLLGEGVPPLKNGFRSSWGMSWMLLLLLEFPAEEGARRTPAMLAGLLPCPVILLLLSLAIPPELTVPGRSLASRLALPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTALTAWSLAPGVLLLLVLTIARLCRREKA |
| Ga0245202_1000204 | Ga0245202_100020412 | F099406 | MAEVGYNSKFEGLEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGELAGNYYSLDYFLEGGDFEGAFELKIVFVSFSDTNTGEGVSESDIGIHVGTYTVTQDKAYKVLSNMVTLSNTMMSYLRFMSKAPRVVTTLVDLPKDTHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA |
| Ga0245202_1000324 | Ga0245202_100032427 | F045105 | MSDKLKRVLDTNLAGLHVTDARTLFILRRVSQDEQRPRVIRWQAIAAVLLVLVLGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADLQFSVDEEAISALMTQVEKDGGCSLSTLLEILCPVGSSLGQWDIRAQVALSQTLERIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFTNLDFYRVGIRFLSGVYDGTCEGAYYCVNFDALDAFGTTYEVAVNAEDGSICRMRRERGAGSNHTADEVTRGFRRIFGYDMRTWTPMQLRVYILALSRADRSSMQTVHELFLSVGRDGFPDVPAEALTREEAIDAALAIQGGSSSDVLAAEYLAGASGDFWKIAIRQPNAPSGQSIVYLELNGLTGTLLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASAAIERQYQRNMAEEGYTCFIESDFEDTAGGFSYYTGGGVVIFTKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAACFTLLMQGYLPPIYQRETVQQLQALLTGGLTDEAGLRQLETDGTLPLFNALLALEVVPDASTKSTADDVTAAALKSLNAHLCYENSSFLVYREDGELIWHFWLSTDMGYFLLDVRDSDLSVVGSVQIPSFSALRASILLPVRVWNTLAENLRVTIFYRDANTQPGIVYGMYANHIVQRYVDLYGANILRWDQATLRSFQSAISISGSYVGDWSVACLCQTIYPDIPDYAISQEVAAEYAARALGDDDYSLRGGVLIDPGEGDPIWKVTLDYPDGRSFNAEVDCRTGAIRTLRQQDTRAMPFYTDYLDFPDDGEYWFRNFVLDEVIEQVRTQMTGRYGNNV |
| Ga0245202_1000352 | Ga0245202_100035264 | F041208 | MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEVISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLNGTAYTAFAINKVEKGYDAFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGMWGPQDGNG |
| Ga0245202_1000635 | Ga0245202_100063528 | F051935 | MKRILTFLLAAELLLTSLSCALADGTSPIVSDGLTELKSKRLIQIVEDEIGEGWTLYQPNGREYEENFSSLVNLREMHFLPVVAWKGNQLRLLILRRQGDLWKVSEQNDCALMRYGWTLHNFSAMGYGNSDWADIYFYFLDENQKEWELALHLSDTNVSYFDMIYVPEKYGTIIVFYYDCELKFLFDAPFYFQLNYDIKPAESYSFDVKDFDLATCPLSMQEFLVPAVVTCGEEGAGLYIMVQQDIQPILTLVDGTAIEAIPQKWERDWTIVYYQGNYLFMKTEYVTFSE |
| Ga0245202_1001254 | Ga0245202_10012542 | F074964 | MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKKLEIPTEYTVKVATLAKDKKRLVAVCSQMLPKVDDIFVKFTLYSKVYKDTNADKEKGVEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESTQQ |
| Ga0245202_1001254 | Ga0245202_100125428 | F090484 | VSCFFLLSLISSSSVTGFWRLSAKDTNRMDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDPLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVSVAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNISTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL |
| Ga0245202_1003886 | Ga0245202_10038862 | F088920 | VSARPHYYPAFWAGLILHLILHFSQKAAIFAPKRAILLLFVPTLFFTGLSVLSPQTSPKISGQTSLYQPWLSPYCLFKD |
| Ga0245202_1006728 | Ga0245202_10067287 | F067844 | MNTLAAETASAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGADVITPQHRSYRVPPGSPQVFGGP |
| Ga0245202_1008250 | Ga0245202_10082501 | F032286 | MVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRLENAPKNADFHAYGQDRKRAEI |
| Ga0245202_1008854 | Ga0245202_10088542 | F105374 | MKKRVALLVALCIWKVVAAQTPYGEMPERFRPDALPCRLGGGVCFGMNGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIDNQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLTGYFPAITNSISLNRYSRSVPSACRSSSSPVGRTPSIEASVGVPSG |
| Ga0245202_1011079 | Ga0245202_10110793 | F087335 | MLELYFNDGNFLPESREEEQSAETVLNDILAGKTADTEMCILPCFYHAPMYKGVDDGTALRIKPTLNEVGEPELLIRCVTGETVEEVYQWVSNYD |
| Ga0245202_1011615 | Ga0245202_10116155 | F047125 | DRTDHMDVVLLLMVLGVMLSGFWVADALDHIRKEIIRQEGKRRGWWS |
| Ga0245202_1014552 | Ga0245202_10145526 | F090515 | VITYCKAGPRAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAF |
| Ga0245202_1020285 | Ga0245202_10202851 | F051936 | MKQEGTGQVLFFPLALRGKAFGFSVLQKHAVMTSVISIFFATLIIRYLSIHISI |
| Ga0245202_1035481 | Ga0245202_10354812 | F081354 | LVRENQQSSAHNFVKDFPLFFPEFRCSSPLKKGAGCKNPLENGKAEVQTLFEPLQATISSMELPKNFENKKLPNTLRRLAFLPFHL |
| Ga0245202_1038192 | Ga0245202_10381921 | F026489 | SLLTPKENQKSASDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF |
| Ga0245202_1048829 | Ga0245202_10488292 | F099269 | LSVQVGELLLLDDLGDRAGGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV |
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