3300029733: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37172

Overview

Basic Information

• IMG/M Taxon OID: 3300029733
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283812 | Ga0245176
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37172
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 166765496
• Sequencing Scaffolds: 11
• Novel Protein Genes: 28
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F042095	Metagenome	159	N
F042910	Metagenome	157	N
F044555	Metagenome / Metatranscriptome	154	N
F050793	Metagenome	145	N
F050794	Metagenome	145	N
F055775	Metagenome	138	N
F056682	Metagenome	137	Y
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F064817	Metagenome	128	N
F073573	Metagenome	120	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078003	Metagenome	117	N
F083451	Metagenome	113	N
F085718	Metagenome	111	N
F087213	Metagenome	110	N
F089053	Metagenome	109	Y
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F094005	Metagenome / Metatranscriptome	106	N
F101192	Metagenome	102	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245176_100156	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	111466
Ga0245176_100171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	100955
Ga0245176_100215	Not Available	84721
Ga0245176_100339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	57116
Ga0245176_100385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	50699
Ga0245176_100477	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	42039
Ga0245176_100858	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	22742
Ga0245176_101242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16254
Ga0245176_101615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12866
Ga0245176_102400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8969
Ga0245176_117841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1263

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245176_100156	Ga0245176_10015610	F102167	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMMGEYVAMLMIRSCEKATKSYTLTSFSFHDKDMDKLRMLIGNAIMAVGYRNNPLTGDGNTTIK
Ga0245176_100156	Ga0245176_10015624	F058555	MGTKIGILHIMKSNFDKIITERYTPRNIQVKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHRASKTPRIKDMFVKKGESVYTCLDKNIDSNTRRWMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTIKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGHLRLSYRGTIMHIIIAEDFIKDVFLGVKGVEMSKAG
Ga0245176_100156	Ga0245176_10015636	F089592	MKDILKSKEVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFIDALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISDIDDKTKKVKDVKKKEDVGEGDKVNTEE
Ga0245176_100156	Ga0245176_10015637	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWESLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVIWEAKNENVHELLGDDNNKPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELSRYRMDKDNVASFK
Ga0245176_100156	Ga0245176_10015643	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNHYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYCLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLNITPAPSDMWNYFDINTLPFFEVDKINPNITNFDFLNDWMNGERRTGWNDDNMSGRGLEHLTSFIAANSNSLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAVYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0245176_100156	Ga0245176_10015646	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLIVLLIVLIANFLARLAQSIRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0245176_100156	Ga0245176_10015647	F075481	MIRLRISLRAIFCLGLSLFLSSCGSRRQVSEASIDSRLISRIETMINEVIDRKVVEIKTSDLNADIVITEREFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGVKDIDKKTDIKHKDVDDKKESRWPIAITSISVLLILLVLIYLLKKMKVL
Ga0245176_100156	Ga0245176_10015654	F106193	MRSLIVSESFLRWLLIAWIVKYKNIVMGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASKSTAGCMVMLDPLKIMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSKHIKP
Ga0245176_100156	Ga0245176_10015672	F064725	VIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLICEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI
Ga0245176_100156	Ga0245176_10015681	F077313	MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGAYDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTIIEPDFAKYIRDTYGIKATPKDTYATLMDRYKVKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRAWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0245176_100156	Ga0245176_10015684	F050794	MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYTSNYFVNVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDVLLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMRDLLDELKDDIDLNILIFDVSQLLIKYNLFRLEAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYMTEEYN
Ga0245176_100171	Ga0245176_10017177	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTAALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREAYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFLRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKISGQ
Ga0245176_100215	Ga0245176_10021577	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0245176_100215	Ga0245176_10021587	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNIPTVPDLEKPIGIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLVNELKDTISRFQAQYNIQEINPYLQDIFQNPEDLVSLSQHHKR
Ga0245176_100215	Ga0245176_10021592	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWLKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0245176_100215	Ga0245176_10021593	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETFEKVITLDKKLKKLIEKLNE
Ga0245176_100339	Ga0245176_10033911	F101192	MTYRGWLLVDIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQLARTAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG
Ga0245176_100339	Ga0245176_10033912	F073573	MPTIVSFYQRFPNEAPPLNLSAFDRTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIHRFCMDCEESAITYQPAFLWYKDYCTKA
Ga0245176_100385	Ga0245176_10038534	F050793	MRKYEVDVPENVEMADIQAIQTRIKKHNLLTVVLLIPLFAGCALRESSETLGGIVFVLSIALMVLGFISGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSDYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYASQEGYEPMDVDFEQMTDEEFQQFLDAHRI
Ga0245176_100477	Ga0245176_10047714	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRQNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYSFNK
Ga0245176_100477	Ga0245176_10047724	F083451	MNVNLINKINNFSNVDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM
Ga0245176_100477	Ga0245176_10047769	F085718	MIIEFDFEIYKRGDYDKVYLRDGKEVRILCDNGKGNCPIVAMFDNNSGKNYTILRYDKTGRRYIDQQSNLDLMLSVKEWEPELWVVVISYMDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSSVLYYVDKLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKKTV
Ga0245176_100477	Ga0245176_10047783	F057001	MPIQVPRARANLMTSKDLNKVQNEVKKASEKTLTGAVKAWCNLFKSGKEINDMLKENDIKVSKEVVPALVALAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKNEQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNER
Ga0245176_100858	Ga0245176_10085812	F055775	MAQIAQQDNLVIEVTTTAAALDGNTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSEAVEAIALN
Ga0245176_101242	Ga0245176_1012426	F087213	MKKFSALLLSMMLILSCFAATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADAALDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGVEVAEDETNPYDMVFVLYGDEMTVGAFVLNPEV
Ga0245176_101615	Ga0245176_10161514	F042910	LADRLYCALNGTTLRDLDARIHLLDVEELAPAVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPAMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITALTISAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC
Ga0245176_102400	Ga0245176_1024006	F089053	MEGPRPDKFAFGVRIGRVVDGCRPAKGCIRKWLYIFANGQLKLSTAKEATVKNIEVSL
Ga0245176_117841	Ga0245176_1178411	F056682	MKMQSRAGKVANQSIRQGEIYSASFGAFLSKNRSTFPIQELRKNREN