3300029714: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36525

Overview

Basic Information

• IMG/M Taxon OID: 3300029714
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283877 | Ga0245242
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36525
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 241224650
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. PC13	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. YE71	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F036964	Metagenome / Metatranscriptome	169	Y
F039198	Metagenome	164	Y
F055715	Metagenome	138	N
F067844	Metagenome	125	N
F067845	Metagenome	125	N
F076064	Metagenome	118	N
F076190	Metagenome	118	Y
F078004	Metagenome	117	N
F088920	Metagenome	109	Y
F090513	Metagenome	108	N
F097493	Metagenome	104	Y
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245242_1000110	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	148676
Ga0245242_1000144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	130924
Ga0245242_1000569	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	57670
Ga0245242_1001405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	24529
Ga0245242_1002574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12156
Ga0245242_1005505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5767
Ga0245242_1007015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	4616
Ga0245242_1009587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. PC13	3499
Ga0245242_1011779	All Organisms → Viruses → Predicted Viral	2917
Ga0245242_1013457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2576
Ga0245242_1014574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. YE71	2385
Ga0245242_1039276	Not Available	889
Ga0245242_1044666	Not Available	778
Ga0245242_1045103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	770

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245242_1000110	Ga0245242_100011035	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEETKRPDELYLRKLLPELTRLKLQPRHVVANDEAYYAAMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY
Ga0245242_1000144	Ga0245242_10001441	F055715	LTKADEFDKINELLIERTAKKFERTSKNKLKKFLTNEKFCDKINELIRVGTAEILD
Ga0245242_1000212	Ga0245242_100021245	F078004	MIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTILIIGTIFHNTF
Ga0245242_1000569	Ga0245242_100056934	F099451	MEIKNVGQLRKIIENISDDYEIEMRVRRKLSDEELKGCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSKNY
Ga0245242_1001405	Ga0245242_100140521	F026489	LFVPRSAGAEAVAEGCSLLTPKENQKSASDFDALEPRKRGCSPLXXXXXXXXPEKTEDSRLFGVKIF
Ga0245242_1002574	Ga0245242_10025747	F039198	MQITNTEIQGTKYVQIYLTEDELQKKETKDLVKKYKQEKYSVAIFVTGKKNYPEILEKIITKQVELNKNVC
Ga0245242_1005505	Ga0245242_10055053	F097493	MYKFYMKNGTAYFYERGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDITFEQPTAEQLEQIQAKTFASMSELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE
Ga0245242_1007015	Ga0245242_10070153	F088920	VSANLHHYPAFWAGLILHLILHFSQKAAIFAPKRAILLLFVPTLFFGFWAVFPLQASSKINGQTSLYQPWLSPYCLFKD
Ga0245242_1009587	Ga0245242_10095871	F026592	LLAANSILCCLRTASPQGIDAQAAQGSVAPLTERSDETFSVGQFFSADRE
Ga0245242_1011779	Ga0245242_10117794	F036964	MSFLKILFPALMVIGAFGSLVVNIVSKGDNPTSLQWIGACLLYTALMLRNRG
Ga0245242_1013457	Ga0245242_10134573	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDVDSNMGYTGDLNDFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0245242_1014574	Ga0245242_10145741	F076190	ADDSITISAKNVFMAASRVSGRVWSLVRITIPNGLKSVKIGVGKPQNNFLYPYFQREPL
Ga0245242_1039276	Ga0245242_10392761	F090513	MAKCVRKMEWKLLHIKHILYMQPFGALKIAPQSIGNKNGTKAVLQGWA
Ga0245242_1044666	Ga0245242_10446661	F076190	GSITISVKNVFMAASRVSGRVWSLVRITIPNDLKSVKIRVEKPQNNSLYPYFQREPL
Ga0245242_1045103	Ga0245242_10451031	F067844	MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSA