NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029682

3300029682: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 006_6_23_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029682 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133095 | Gp0281883 | Ga0242767
Sample NameHuman feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 006_6_23_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size150497204
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076190Metagenome118Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0242767_118604All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales801Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0242767_118604Ga0242767_1186042F076190MSAKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL

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