3300029679: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-50_Run5

Overview

Basic Information

• IMG/M Taxon OID: 3300029679
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133112 | Gp0282357 | Ga0243220
• Sample Name: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-50_Run5
• Sequencing Status: Permanent Draft
• Sequencing Center: Zhejiang University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129820388
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Hangzhou
• Coordinates
  • Lat. (^o): 30.0
  • Long. (^o): 120.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054110	Metagenome	140	N
F073671	Metagenome	120	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243220_100371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	43124
Ga0243220_103314	All Organisms → Viruses → Predicted Viral	4861
Ga0243220_103444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	4703

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243220_100371	Ga0243220_10037123	F054110	VNYQPTIKKLLKALQVNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKAYKGGD
Ga0243220_103314	Ga0243220_1033143	F054110	VVLDVNYQPTIRKLLTALRMNGRRYVVDTRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPEKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGE
Ga0243220_103444	Ga0243220_1034446	F073671	MNKETEHELAELHEKERSLEKALELVREKIRELVNYTDKNKEQK