3300029672: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-47_Run3

Overview

Basic Information

• IMG/M Taxon OID: 3300029672
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133112 | Gp0282501 | Ga0243361
• Sample Name: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-47_Run3
• Sequencing Status: Permanent Draft
• Sequencing Center: Zhejiang University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 126457409
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Hangzhou
• Coordinates
  • Lat. (^o): 30.0
  • Long. (^o): 120.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F062845	Metagenome	130	N
F090515	Metagenome	108	N
F099451	Metagenome	103	N
F101193	Metagenome	102	N
F102166	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243361_100442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	36345
Ga0243361_108928	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	1996
Ga0243361_110487	All Organisms → cellular organisms → Bacteria	1636
Ga0243361_112581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1295
Ga0243361_118205	Not Available	846
Ga0243361_120581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	746

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243361_100442	Ga0243361_10044221	F062845	MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNGVPSRACT
Ga0243361_108928	Ga0243361_1089281	F051936	MKQEGTGQVLFFLLAPRGKAFGFSGLSETAVMTPVIINFSL
Ga0243361_110487	Ga0243361_1104871	F099451	MAIDKIKTVGQLRKVIESLSDDYEIEMRIRRKLSDDEIRELHNKYGRIYPYPYETQYPELEFDDIGVSDKVLCLGVELKNE
Ga0243361_112581	Ga0243361_1125811	F102166	MKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYCIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEAMEDYITEIANGESADNVFAMWQADIGAV
Ga0243361_118205	Ga0243361_1182051	F090515	MITCCKVGPKTALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0243361_120581	Ga0243361_1205812	F101193	MARKCTEYHYFQHTYWDVMARYNWMRCPYCGKLCKPSRFKAAAVLVPIELVIFVVCIFFRNSMNDAIGWFAAYLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH