3300029657: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_His2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029657
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321330 | Ga0307343
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_His2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40679629
• Sequencing Scaffolds: 13
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.	1
Not Available	7
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020914	Metagenome / Metatranscriptome	221	N
F025291	Metagenome / Metatranscriptome	202	N
F039694	Metagenome / Metatranscriptome	163	Y
F040648	Metagenome / Metatranscriptome	161	Y
F047076	Metagenome / Metatranscriptome	150	N
F059033	Metagenome / Metatranscriptome	134	N
F059998	Metagenome / Metatranscriptome	133	Y
F062800	Metagenome / Metatranscriptome	130	N
F067770	Metagenome / Metatranscriptome	125	N
F070165	Metagenome / Metatranscriptome	123	N
F072475	Metagenome / Metatranscriptome	121	N
F077342	Metagenome / Metatranscriptome	117	N
F101222	Metagenome / Metatranscriptome	102	N
F103495	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307343_101008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.	2735
Ga0307343_102117	Not Available	2005
Ga0307343_106930	Not Available	1141
Ga0307343_107982	Not Available	1060
Ga0307343_109705	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	948
Ga0307343_113846	Not Available	768
Ga0307343_114056	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	761
Ga0307343_115716	Not Available	708
Ga0307343_117543	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	661
Ga0307343_117762	Not Available	656
Ga0307343_121706	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	579
Ga0307343_123640	Not Available	549
Ga0307343_127604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307343_101008	Ga0307343_1010083	F020914	MAIYQKYGFAIDQILSEDQALPTYPQPGDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILITQGVQSDVSWASGEMICQFNIPAKLIGSARYLKLTYVTSANESAEKVEAFSVRR
Ga0307343_101008	Ga0307343_1010085	F067770	MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRNGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGDRYLERIAKLQ
Ga0307343_102117	Ga0307343_1021174	F047076	MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLRTQILKPNNVNQYEDLNNFRELDIVKIDSVKDTSRDDVYWEVRHRKLLIYDSNKELITNETVGNHNLEIEYWESISGAITPFPTNTVTENDPNVIEEWNKSIPSISDVEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF
Ga0307343_106930	Ga0307343_1069303	F101222	DSKMSVWVAIAINIVVYLVSFAYAWGKLNTKIADIEKRYYELNEKVSDIMECSIQKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGEVKNGKYIK
Ga0307343_107982	Ga0307343_1079821	F059033	MAITTANLQALAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNVPSFGYEKAFKGFHQYAKDLGQVIAQKGATTVYCSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPI
Ga0307343_109705	Ga0307343_1097052	F072475	MSESFASRFMSPDEKTAMVARDPQSAQALTNAPRMGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLACLNHVLKESISKHHTDNDAARKQQLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSLEEEQNIRRWNGCSP
Ga0307343_113846	Ga0307343_1138461	F070165	MRRRGRNARRSTQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH
Ga0307343_114056	Ga0307343_1140561	F077342	MARTLNEFVSSTGNYVYEITDAEMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIDQVFEISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHVAENLDSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAKEQRREILNPKRIF
Ga0307343_115716	Ga0307343_1157161	F062800	YQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307343_116171	Ga0307343_1161712	F020914	MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILIKEGIQSDASWLPGEMICQFNIPAKLIGSARYLK
Ga0307343_117543	Ga0307343_1175432	F103495	DSGLLYMIFSTLLTVGIGFIVGKGVSFKEIQDIIKVVDESYKDGYISPEEAQKIYEEITDVIGQDWYIRLFKLFKR
Ga0307343_117762	Ga0307343_1177621	F025291	HSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMSIVYNEFKIHKAVFTSLPTTNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK
Ga0307343_121706	Ga0307343_1217061	F059998	INTTMDDLEFISDLALLELAKLNPTLSGQPLTEKAKKYFLHEIRSRRWELGRGRQVTPLTETGAIVSDAHGWPVSFQDVIREIAGEMFELPEKKTTVGVMTQDEYISAMRAATTPEQQIELMNAWTEQQKRK
Ga0307343_123640	Ga0307343_1236402	F040648	LLEIEPMLDTAREGVAALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNATTKSALKDALKNASQEQIERAYAILSGQEAVEDVPGEGDEE
Ga0307343_127604	Ga0307343_1276041	F039694	ALAATGVQRESRAGRQAQMESNIVETMRRYFQIDTGKTKGDLEYTILNSVKRYFEGKLSEKQR