3300029653: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35653

Overview

Basic Information

• IMG/M Taxon OID: 3300029653
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283860 | Ga0245224
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35653
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 113213559
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055775	Metagenome	138	N
F076064	Metagenome	118	N
F089053	Metagenome	109	Y
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245224_100153	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	96567
Ga0245224_100400	Not Available	43562
Ga0245224_112008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1174
Ga0245224_116077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	867

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245224_100153	Ga0245224_10015377	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRLDELYMRKLLPELTHLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY
Ga0245224_100400	Ga0245224_10040059	F055775	MAQIAQQDNLVIEVTTTAAVLDGATKKKLIECIEGGTITDVILVTKEVEKEISHARVVSWLVDTTGDSPKYT
Ga0245224_112008	Ga0245224_1120082	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGADSFLFCG
Ga0245224_116077	Ga0245224_1160771	F089053	MEGPRPDKFAFGVKIGRVVDGCRPVKGCIRKWLYIFANEQLKLSTAEEVNVKNMEVSL