3300029638: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_80m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029638
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0297571 | Ga0257144
• Sample Name: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_80m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 107744556
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Alt. (m): N/A
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004178	Metagenome / Metatranscriptome	449	Y
F022812	Metagenome / Metatranscriptome	212	Y
F026446	Metagenome / Metatranscriptome	198	Y
F046170	Metagenome / Metatranscriptome	151	Y
F071959	Metagenome / Metatranscriptome	121	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257144_1003241	Not Available	2596
Ga0257144_1005228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2081
Ga0257144_1008202	Not Available	1688
Ga0257144_1013816	Not Available	1284
Ga0257144_1030592	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	808
Ga0257144_1031885	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	788

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257144_1003241	Ga0257144_10032414	F026446	MKVTGETFSFIQKEKKSRRGKIPKVFKLSGKRTVTGQNSGELYTKKHRRG
Ga0257144_1005228	Ga0257144_10052281	F026446	NRRDFFFSKKEKRSRRGKIPKVLKLSGKRTVTGQNSGELYTKKHRRGNS
Ga0257144_1008202	Ga0257144_10082023	F046170	MIRIQDFGEVAYGGAVTLTSWWDNKRIEEGKIGTKDVFKKASFYTYLGVGLVATLMSVFGWMRRYEVWTEKVSTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQAQSTQRSYQPEFNKTMAW
Ga0257144_1013816	Ga0257144_10138162	F071959	MASRNYLINSNDMTLTDKKEYRTKALAAGLERCGQKNIGNVNADIPVLAGIPPANMEARVAEIKAHIETGKWPKTIDQRELALLTDFVAAAAQDFWLTVALAAVGTVYTCLGLLPAYTFPAGRLMVCYGVSVDAAVLPVSRLIFRRGSAVGNIQAQFDMQPLGPRLETAAFFSEPVVIDPQDPFAIQVLCNIIAGATPVHIDNFLFEIAGAVIA
Ga0257144_1013816	Ga0257144_10138163	F046170	FGEIAYGGAVTLTEWWDNKRIDQGKIGTKDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDLPRFAYNLTKAMGSSSKRGSGAESRAVQEAQKILQERMSAKALTQGRTAERSYQREFESVAPHAF
Ga0257144_1030592	Ga0257144_10305921	F004178	MRPTAPHAAESSVGKHTARESEAPNVCEWERARGERPP
Ga0257144_1031885	Ga0257144_10318851	F022812	MSKLAFRPQTVDIAYLPLRQDFLAKNVLMTAQRDYGLGNSFFLSMAGLTPN