3300029623: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36049

Overview

Basic Information

• IMG/M Taxon OID: 3300029623
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283774 | Ga0245138
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36049
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 307837722
• Sequencing Scaffolds: 20
• Novel Protein Genes: 23
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F039147	Metagenome	164	N
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F047126	Metagenome	150	N
F055739	Metagenome	138	N
F055775	Metagenome	138	N
F056682	Metagenome	137	Y
F058154	Metagenome	135	N
F070133	Metagenome	123	N
F074899	Metagenome / Metatranscriptome	119	N
F076190	Metagenome	118	Y
F078822	Metagenome	116	N
F084124	Metagenome	112	Y
F088920	Metagenome	109	Y
F088921	Metagenome	109	N
F090513	Metagenome	108	N
F091068	Metagenome	108	N
F096287	Metagenome	105	N
F101191	Metagenome	102	N
F101193	Metagenome	102	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245138_1000083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	160294
Ga0245138_1000186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	113083
Ga0245138_1000251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	94095
Ga0245138_1000301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	84008
Ga0245138_1000393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	70107
Ga0245138_1000750	All Organisms → cellular organisms → Bacteria	43510
Ga0245138_1000959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	36043
Ga0245138_1001248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	29034
Ga0245138_1001365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	27143
Ga0245138_1002344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	17931
Ga0245138_1002517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	17038
Ga0245138_1004340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10898
Ga0245138_1006304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	7904
Ga0245138_1010719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4732
Ga0245138_1018769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2633
Ga0245138_1026931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1801
Ga0245138_1045150	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1045
Ga0245138_1047013	All Organisms → cellular organisms → Bacteria	1001
Ga0245138_1056237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	830
Ga0245138_1082966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	558

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245138_1000083	Ga0245138_10000833	F070133	MKRLLGLLMAVMVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVAIYFTEGEKSELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLRIYDWSFCAFPDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLHTANDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
Ga0245138_1000186	Ga0245138_100018670	F084124	LNTTAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKIFMGAAQTRNL
Ga0245138_1000251	Ga0245138_10002517	F043945	MKHNLRMAFLSLLLVLTLGVMPVFAESPDHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLSGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVNTGKGEMMEFALEDDENSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGGVE
Ga0245138_1000251	Ga0245138_10002519	F091068	MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKEEQTANVPRIDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLCFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWSEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
Ga0245138_1000301	Ga0245138_100030110	F096287	MQRIQKRRAGQRQTQNALIGLLSAVSMTRVGLTQLLPLCGSAAWWLSAACMLPGLCVYGALRLLLRHTHTRTLTDCARKLLGNFGSILIMLTLTLPLLLDGIASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNRDGLPRGVYLLRHVLLVAAAIIAINALLDAHPDGIVPLLGEGVPPLLSGIRSAWGMSWMLLLLLEFPAEEGARRTPAMLAGLLPCPVILLLLSLTIPPELTVPGRSLASRLALPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTALTAWSLVPGVLLLLVLTIARLCRREKA
Ga0245138_1000393	Ga0245138_100039362	F101191	LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSGTEMTERVTTLTPKQARKLLSRLCWIGTTSRGLLVIELRNPLCISGASLTSVPDGAGRLPFTFLAQSDRPGDVNLPARLYWWKEETHDAA
Ga0245138_1000750	Ga0245138_100075012	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDASRHDVTLYMLCPLLYGGTLAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKTIEEKAARIES
Ga0245138_1000959	Ga0245138_100095911	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYAMSRVPNYRMPDLTHAISELTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNISYRDLETDKVYTYPASLTRMYVCGSVLAISVMQENGIKVVLVDLADGAIREIADESLEAMYEWADGELLLWRLEGSPNEISRSSGTYALSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLAKSAVNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRNGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENMPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTMNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVGEADKLIEGLEQ
Ga0245138_1001248	Ga0245138_100124826	F101193	MARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVRFFMPYETLSEDETQKFRDLQEH
Ga0245138_1001365	Ga0245138_100136511	F084124	LFGGLNITALAFARATKENTLPFHGQRNALTVFLAFPVTMAIACFNKLSFSAQTTTLFAPEELLYRMIFMGAAQTRKPLKRLDLNFLII
Ga0245138_1002344	Ga0245138_10023441	F078822	AFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0245138_1002517	Ga0245138_10025174	F055739	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRSIGLSRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALVERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDENGQMPPEGKPIAWTIEIDVLKAVLQTETMPDDLYEALSEEDDVAQYIREQAEQHVITLTDAGVEDYLLEMCGVGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELSGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGSVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0245138_1002517	Ga0245138_10025176	F043413	MTERKLREKLQSAYGTMPDATRAAFEHSLTHHRVKTRHPVRMSRRMRTIVTFALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDGTGSWSDSPFGFDGVLWDDDMQSPPEGTPIAWTMTFELLQPVWEVEYLSDAQYQALLAGGADALEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE
Ga0245138_1004340	Ga0245138_10043402	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLESSTVVGKDEVGSSNLPSSSNINRLNHLI
Ga0245138_1006304	Ga0245138_10063047	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAVLVETDDIFNVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKIAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0245138_1010719	Ga0245138_10107192	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYIKRRNAD
Ga0245138_1018769	Ga0245138_10187691	F032286	GNTANDTLVTGGTFRFCRLMCLCVKRRNIILNDKRRSLLNSALFRAYNRTERKTISLFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRTYPVRTVMQLSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIEGRTTLCSQSSPFRNGSKTCAWSAV
Ga0245138_1026931	Ga0245138_10269314	F056682	MKTQSRTGKEANQPIAQGEMYSASFSAFPSKNRSTFSIQELGKIYENQEVL
Ga0245138_1045150	Ga0245138_10451502	F055775	MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINAKSGAVEAIALN
Ga0245138_1047013	Ga0245138_10470132	F076190	SAKNVFTAASRVSGHVWSFARITVPNGLKYVKIGVEKPQNNSLYPYFQREPL
Ga0245138_1054545	Ga0245138_10545451	F101356	AKCTFLDEKLQTDVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0245138_1056237	Ga0245138_10562371	F088921	LGATIRLYKIGAGKNHFLSSEKSKSTVFDLDRETKKRKCAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKLRSK
Ga0245138_1082966	Ga0245138_10829661	F088920	LHHYPAFWAGLILHLILHFSQKAAIFAPKRAILLIFVPTLFFACLAVFSLHTSPKISGQTSLYQPWLSSYCLFKD