3300029596: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Arg2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029596
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321332 | Ga0307345
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Arg2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35029541
• Sequencing Scaffolds: 18
• Novel Protein Genes: 23
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020914	Metagenome / Metatranscriptome	221	N
F022205	Metatranscriptome	215	Y
F022683	Metagenome / Metatranscriptome	213	N
F028541	Metagenome / Metatranscriptome	191	Y
F029768	Metagenome / Metatranscriptome	187	N
F031111	Metagenome / Metatranscriptome	183	N
F036251	Metagenome / Metatranscriptome	170	Y
F040648	Metagenome / Metatranscriptome	161	Y
F049017	Metagenome / Metatranscriptome	147	N
F051952	Metatranscriptome	143	N
F068879	Metagenome / Metatranscriptome	124	N
F070167	Metagenome / Metatranscriptome	123	N
F077342	Metagenome / Metatranscriptome	117	N
F080090	Metagenome / Metatranscriptome	115	Y
F082734	Metagenome / Metatranscriptome	113	N
F084407	Metagenome / Metatranscriptome	112	N
F090570	Metagenome / Metatranscriptome	108	N
F094051	Metagenome / Metatranscriptome	106	N
F097599	Metagenome / Metatranscriptome	104	N
F103328	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307345_100199	Not Available	4354
Ga0307345_100622	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	2899
Ga0307345_102230	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1752
Ga0307345_102751	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	1597
Ga0307345_103647	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1402
Ga0307345_108276	Not Available	919
Ga0307345_110458	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	809
Ga0307345_112242	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	737
Ga0307345_112735	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	720
Ga0307345_112757	All Organisms → cellular organisms → Bacteria	719
Ga0307345_113555	Not Available	695
Ga0307345_114695	Not Available	664
Ga0307345_115431	Not Available	644
Ga0307345_115863	Not Available	633
Ga0307345_120841	Not Available	540
Ga0307345_121606	Not Available	530
Ga0307345_122789	Not Available	514
Ga0307345_123709	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307345_100199	Ga0307345_1001991	F068879	VIGAPWRDNRVTKEEGFVAGATACPGSRRGLPPGVTVFANARIN
Ga0307345_100622	Ga0307345_1006225	F082734	VSHRHLFGGQTITWQAFDEEEAKKRGVSYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSNRLKLTQKEEKDAQTN
Ga0307345_102230	Ga0307345_1022301	F097599	EPAPVQHVNLTEFENLKKELETAKAQTAELVNLKQELETLKAEKATAEKDTKWNAMKANLPEGWLGAKEPETRKEFEADPGAFALKVVAFKNTQPQEQKAEGAGVAGGSGDAESTEEQKFANMAAEVAKATGIQFV
Ga0307345_102230	Ga0307345_1022303	F094051	MANTGVLGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMTLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGATSIHPTLNIPVFISTDVDKLDDTSGNRFVFGVCNATPGVVTVISKIKARQYDDPNLGAQVYQYDIWRSPFSNIQQTSGNLNLGVMRGHMTES
Ga0307345_102751	Ga0307345_1027511	F031111	KKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKEILKPLNLALIKLSKPKLTFP
Ga0307345_103587	Ga0307345_1035871	F020914	MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILIKEGIQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR
Ga0307345_103647	Ga0307345_1036471	F080090	ERFILMRWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT
Ga0307345_108276	Ga0307345_1082763	F070167	MSWLGNALFGQSRLKGYDMTPQQLTQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNQSGFFGGLFGNLVGASPAL
Ga0307345_110458	Ga0307345_1104581	F022683	MASEMADQMKPLTEFYAKWSKDALEMMSKGLGMYDKMIRAWTEVGGQAQAEQPEDTIKKWADAFGGSYKDLFEMYTQPFKMFGAAGEIPGKEAWQDAFSKWQKMFTAMPSGSTPTSGDEFMNFSKHWFEGYSKVWQAWMESMQTMGEACKAAVSEGENPDAAMGAFTEISDKFMQQWAAFVTDQAQAFFSLWRSRLPDEKTEPKR
Ga0307345_112242	Ga0307345_1122422	F028541	MNEQERLKLINRLKTARTSEERDQILWYLAGQDKAARGKAQRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKAKRAQRKAAEEA
Ga0307345_112735	Ga0307345_1127351	F090570	MNEFGNAYIEKVWCNSVKSPRPLKVIPYLKDFKVFFSVKGTEIGRITIGVFVDDILDQMLTTNILEKNKSLAIWFWYPYKRKQMGKHVIQFKIGEATDRTIDSVTWKYTSDKYIVEVK
Ga0307345_112757	Ga0307345_1127571	F068879	MLGNPKKRTTTNRSVYVIGASWRDNWVTKEEGFVAGATACPGCRRGLPPGVT
Ga0307345_113555	Ga0307345_1135551	F084407	MPTSGNVLALLPVLTPYTATSAQFDLLYPYALDEFEGDDPGCSKTGAERALAYLMAHYLAGGEDQIGFSGEKIDDYSYTVAGPAATSSRWYVLYRQQLDRCRDVRAISPAGLTGVQHADATGLKDL
Ga0307345_114695	Ga0307345_1146951	F036251	MSAKERQTVLFGDTGVTTPIDTTDRVRLSDGMVFVAQKIEVRPSNAYGEYVVFDGEDLDGKDFHAYSTSSVILQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGRRFL
Ga0307345_114695	Ga0307345_1146952	F040648	VINHEEALLEIEPMLDTAREGVAALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNATTKSALKDALKNASQEQIERAYAILSGQDAVEAVPAEGGEE
Ga0307345_115022	Ga0307345_1150221	F029768	LDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIEEKQREGYSLEQAKENYFLFQTVEYLEFLEQAKVMSNHSLRFMERATEKMNGILQETESKIEQAMKEIAQEQEK
Ga0307345_115431	Ga0307345_1154311	F049017	SSITVTSNNEISAVTMSGTDTTKFREFGADIDSIKFTIEGTGSASYSEVQKLEAKFSKKTTALITAKNSLLDAVACGVAIIRVDNNGNAWLSGYTVKDKNRRAYNKITTNFDTGAKPSDEGTAAYTITLEAEGFDDELAFDTTLNSAIVGGTATFIDYN
Ga0307345_115863	Ga0307345_1158631	F103328	MVSLILTVVIAAVTMMVGLVVVGNMESSMPDISGSALSTSLTSVMENTGTAFNFLALGLFVLAAVFIIGIVAGVLGGGQ
Ga0307345_116965	Ga0307345_1169652	F020914	MAIYQKYGFAIDQILSEDQALPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGLTANAVTTVLPSILIKQGVQTDVSWDSGEMICQFNIPAKLIGSARYLKLTYVTSADESD
Ga0307345_120841	Ga0307345_1208412	F036251	MTGQKRQTVLFGDTGVVAPIDTSERVRLSDGAVFVAQRIEIRPSNIYGEYVVFDGEDLDGKDFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCTVKSVLNVNTGRRFFTLV
Ga0307345_121606	Ga0307345_1216061	F051952	VTLEETCILFLSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSKTDYLEFLFRNFNTNRVQLFPQKKPGEKLHSSSN
Ga0307345_122789	Ga0307345_1227891	F022205	KRFLLPYNKFHSASTPSSSLTASAMGLPLDRPCRPHAVEIRYANAAPAGIRFKIYAGNNEEVYVSPALIAGQAPQVFRATLPANTDFALYDSSATVMDFAGSATWAIRLTMAHKENMA
Ga0307345_123709	Ga0307345_1237091	F077342	YVYEITDAEMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIEQVFDISAQYFLLYSPTYCRNAGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTIDEPAREQRREILNPTRIF