3300029566: Human fecal microbial communities from Shanghai, China - P040V6

Overview

Basic Information

• IMG/M Taxon OID: 3300029566
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283557 | Ga0244934
• Sample Name: Human fecal microbial communities from Shanghai, China - P040V6
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 180811321
• Sequencing Scaffolds: 8
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Hungatella → Hungatella hathewayi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. 20_3	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F051936	Metagenome	143	N
F056682	Metagenome	137	Y
F062845	Metagenome	130	N
F074899	Metagenome / Metatranscriptome	119	N
F074964	Metagenome	119	N
F089054	Metagenome	109	N
F090484	Metagenome	108	N
F092227	Metagenome	107	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244934_100109	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	134295
Ga0244934_100209	Not Available	86616
Ga0244934_100483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	42806
Ga0244934_104578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Hungatella → Hungatella hathewayi	5259
Ga0244934_108375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3320
Ga0244934_117274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1764
Ga0244934_118553	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. 20_3	1644
Ga0244934_125133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1205

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244934_100109	Ga0244934_100109104	F099406	MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKVLEPLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKYAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA
Ga0244934_100109	Ga0244934_100109125	F090484	MKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKIYRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGIAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISVQSLPNINITVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0244934_100109	Ga0244934_100109150	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKTADWCAENVIYGGEYKSFGFSTAETLETKKSAKWLVKETDEYKATYVAVKIKSYSIRTVTKCVSEYLTHESNQQ
Ga0244934_100109	Ga0244934_10010965	F098313	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKRDDRAFKLLWNFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKNGKED
Ga0244934_100209	Ga0244934_10020962	F089054	MLTSGRFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTYIRLKLREILKVNLTDITIIDIISLP
Ga0244934_100483	Ga0244934_1004837	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSSIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0244934_104578	Ga0244934_1045787	F074899	MSGRKQWNKQAATSSFLGKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSRTTPEIFG
Ga0244934_108375	Ga0244934_1083754	F062845	MEKTPFILNEKFRSDNNEQRKEHFQNKFERYIVDELSNTVSSKSCA
Ga0244934_117274	Ga0244934_1172741	F092227	EMNEQKRKRILRVGCLILAGVFLLSVLGSVILMFLV
Ga0244934_118553	Ga0244934_1185533	F051936	QVLFFLLALRGKAFGFSGLSETAVMTPVIINFSLLLIIR
Ga0244934_125133	Ga0244934_1251332	F056682	MKMQSRAGKVANQSIRQGEIYSASFGAFPLKNRSTFPIQELRKNRENQEVL