3300029555: Human fecal microbial communities from Shanghai, China - P118V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029555
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283676 | Ga0245053
• Sample Name: Human fecal microbial communities from Shanghai, China - P118V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151661421
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F068855	Metagenome	124	N
F071325	Metagenome	122	N
F076190	Metagenome	118	Y
F078693	Metagenome	116	N
F087336	Metagenome	110	N
F099406	Metagenome	103	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245053_100450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	44739
Ga0245053_100481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	41734
Ga0245053_100556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	37139
Ga0245053_100878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	24121
Ga0245053_101523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	13867
Ga0245053_101596	Not Available	13137
Ga0245053_101718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	12241
Ga0245053_105285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3871
Ga0245053_140870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	611

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245053_100450	Ga0245053_10045013	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGWAIPEKTEDSRLFGVKIF
Ga0245053_100481	Ga0245053_1004816	F026489	VEQGRGEEDVAERGSLLTPKENQKSASDFDALEPRKRGYSPLLTPKRWAAPEKTEDSRLFGVKIF
Ga0245053_100556	Ga0245053_1005561	F078693	MVLAPVRGPERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGEVETEKS
Ga0245053_100878	Ga0245053_10087819	F087336	MVAELEQLPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERETKIGLAEQRQVAFLGIAFQILPLKSKQKRAP
Ga0245053_101523	Ga0245053_1015234	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKSAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0245053_101596	Ga0245053_10159610	F099406	MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPAVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSSYLDLSIFPSTSGTLDEDSYAKVLNAYNNNITLGKLSSYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATNLSMAVSAEDVGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA
Ga0245053_101718	Ga0245053_10171812	F071325	GIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0245053_102493	Ga0245053_1024931	F078693	MFSFDVKREPEKHPLLAPVRGLERFFIKANCSLLMSKENQKSTSDFDALDPRERGCSPLSDPEGEVEVEKC
Ga0245053_105285	Ga0245053_1052857	F076190	VTTAGGSITISVKNVFTAASRVSGHVWSLVRITVPNDLKFVKIRVEKPQNNSLYPYFQREPL
Ga0245053_140870	Ga0245053_1408702	F068855	VEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVIYFAALAGQADAL