3300029551: Human fecal microbial communities from Shanghai, China - P096V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029551
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283634 | Ga0245011
• Sample Name: Human fecal microbial communities from Shanghai, China - P096V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 150055726
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F055775	Metagenome	138	N
F064817	Metagenome	128	N
F076190	Metagenome	118	Y
F080163	Metagenome	115	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245011_100490	Not Available	59845
Ga0245011_100687	Not Available	43895
Ga0245011_101025	All Organisms → cellular organisms → Bacteria	26260
Ga0245011_111906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1231

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245011_100490	Ga0245011_10049017	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYIRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIESNINQENQDENETV
Ga0245011_100490	Ga0245011_1004904	F044555	MKTTNPSSRITLSQKGNQILSCKVYKEPNYILSMSNEEILELISGLDYMGNIPMVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0245011_100687	Ga0245011_1006875	F055775	MAQIAQQDNLVIEVATTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSIKYTIDIINAKSGAVEAIALN
Ga0245011_101025	Ga0245011_10102524	F032312	MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYTFILVVWFIIFLYGLVS
Ga0245011_101025	Ga0245011_10102527	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESVNFRINQRNIKYFYEAMQNFENSLVDEFKEKKNNFCSTNQFLESISDFDKIIFVIITYMKSYFDFCKDYSKISLHVHLVQFDFTTSILIQGFYNYSHRDLSFSTKLESYVSDSEIELLQEKLDLIREEICKIMGIDPDLQKKGPKENYIFNLNIDSDNQIGFFLQATEL
Ga0245011_111906	Ga0245011_1119061	F076190	KNVFTAASRVLGRVWSLVRITIPNGLKYVKIGVEKPQNNSLYPYFQREPL