3300029550: Human fecal microbial communities from Shanghai, China - P101V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029550
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283642 | Ga0245019
• Sample Name: Human fecal microbial communities from Shanghai, China - P101V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88719162
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → unclassified Bacteroidia → Bacteroidia bacterium UC5.1-2G11	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F047125	Metagenome / Metatranscriptome	150	N
F051936	Metagenome	143	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245019_100221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	46557
Ga0245019_104114	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → unclassified Bacteroidia → Bacteroidia bacterium UC5.1-2G11	3156
Ga0245019_123252	Not Available	551

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245019_100221	Ga0245019_10022110	F026489	LTPKENQKSASDFDALEPRKXXXXXXXXXXXPEKTEDSRLFGVKIF
Ga0245019_104114	Ga0245019_1041143	F051936	MKQEGTGLCPVLPLALRGKAFGFSVLQEHAVMTLVISIFFAMLIIRHLSIHISIKK
Ga0245019_123252	Ga0245019_1232521	F047125	MDVALLLMVLGVMLSGFWAADALDHMRKEIIRQEG