Sample 3300029548

Overview

Basic Information
IMG/M Taxon OID	3300029548 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133133 \| Gp0283626 \| Ga0245003
Sample Name	Human fecal microbial communities from Shanghai, China - P092V1
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	167728534
Sequencing Scaffolds	10
Novel Protein Genes	13
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Shanghai, China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	China: Shanghai
Coordinates	Lat. (^o)	31.2112312	Long. (^o)	121.4647709	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F047126	Metagenome	150	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067845	Metagenome	125	N
F073656	Metagenome	120	N
F077405	Metagenome	117	N
F084124	Metagenome	112	Y
F088914	Metagenome	109	N
F099269	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F032312

Metagenome / Metatranscriptome

180

F044555

Metagenome / Metatranscriptome

154

F047126

Metagenome

150

F060985

Metagenome / Metatranscriptome

132

F064817

Metagenome

128

F067845

Metagenome

125

F073656

Metagenome

120

F077405

Metagenome

117

F084124

Metagenome

112

F088914

Metagenome

109

F099269

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0245003_100254	Not Available	85113	Open in IMG/M
Ga0245003_100282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	78435	Open in IMG/M
Ga0245003_100682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	40930	Open in IMG/M
Ga0245003_104214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6053	Open in IMG/M
Ga0245003_105000	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	4999	Open in IMG/M
Ga0245003_106449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3749	Open in IMG/M
Ga0245003_114325	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1573	Open in IMG/M
Ga0245003_125878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	787	Open in IMG/M
Ga0245003_129879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	662	Open in IMG/M
Ga0245003_135212	Not Available	551	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0245003_100254

Not Available

85113

Open in IMG/M

Ga0245003_100282

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

78435

Open in IMG/M

Ga0245003_100682

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

40930

Open in IMG/M

Ga0245003_104214

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

6053

Open in IMG/M

Ga0245003_105000

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes

4999

Open in IMG/M

Ga0245003_106449

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

3749

Open in IMG/M

Ga0245003_114325

All Organisms → cellular organisms → Bacteria → Terrabacteria group

1573

Open in IMG/M

Ga0245003_125878

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

787

Open in IMG/M

Ga0245003_129879

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella

662

Open in IMG/M

Ga0245003_135212

Not Available

551

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0245003_100254	Ga0245003_10025432	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0245003_100254	Ga0245003_10025444	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISKFQAQYNIQEINPYLQDILQNPGDLVSLSQHHKI
Ga0245003_100254	Ga0245003_10025450	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHAETNLGMCKIFDNQDHGFWHSVIKPWFQLERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKVYPT
Ga0245003_100254	Ga0245003_10025451	F032312	MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIDGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0245003_100282	Ga0245003_1002821	F084124	LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNILSFSTQTAWLFAPDKLLYRKIFMGAAQTRNF
Ga0245003_100682	Ga0245003_10068238	F084124	LNKQAKALARATKGNTLHFHSQRNALTMFLAFLFIMAVACFNKLSLNTQTAWLFAPDKLLYRTILWALPKPAIFEKIE
Ga0245003_104214	Ga0245003_1042147	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLKVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPNDVTVALPLDSTAMTAWLYAPQADSAAAKLLEDAVGHNEMGAAFIDYNGAAYVVAVFR
Ga0245003_105000	Ga0245003_1050001	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRK
Ga0245003_106449	Ga0245003_1064494	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSIPYTPKENIKNPGKFIVFSAWYAAKALEMDVK
Ga0245003_114325	Ga0245003_1143253	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTVAANQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0245003_125878	Ga0245003_1258782	F067845	LALGVLTACSGLGSVNTGTDAEKAAELARQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADSNMGHTDDLNAFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHSEMGAAFIDYNGTAYVVAVFR
Ga0245003_129879	Ga0245003_1298791	F099269	VHGVLVSVQAGELLLLDDLGDRAGGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
Ga0245003_135212	Ga0245003_1352122	F077405	LLVAKQRGVFYGFISLCQIKFVKKVFDWLKIIQKQKVRLK

Scaffold ID

Protein ID

Family

Sequence

Ga0245003_100254

Ga0245003_10025432

F064817

MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV

Ga0245003_100254

Ga0245003_10025444

F044555

MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISKFQAQYNIQEINPYLQDILQNPGDLVSLSQHHKI

Ga0245003_100254

Ga0245003_10025450

F060985

MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHAETNLGMCKIFDNQDHGFWHSVIKPWFQLERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKVYPT

Ga0245003_100254

Ga0245003_10025451

F032312

MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIDGYPFKKYAIPYIFILVAWFIIFLYGLVS

Ga0245003_100282

Ga0245003_1002821

F084124

LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNILSFSTQTAWLFAPDKLLYRKIFMGAAQTRNF

Ga0245003_100682

Ga0245003_10068238

F084124

LNKQAKALARATKGNTLHFHSQRNALTMFLAFLFIMAVACFNKLSLNTQTAWLFAPDKLLYRTILWALPKPAIFEKIE

Ga0245003_104214

Ga0245003_1042147

F067845

MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLKVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPNDVTVALPLDSTAMTAWLYAPQADSAAAKLLEDAVGHNEMGAAFIDYNGAAYVVAVFR

Ga0245003_105000

Ga0245003_1050001

F073656

MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRK

Ga0245003_106449

Ga0245003_1064494

F088914

VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSIPYTPKENIKNPGKFIVFSAWYAAKALEMDVK

Ga0245003_114325

Ga0245003_1143253

F047126

VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTVAANQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC

Ga0245003_125878

Ga0245003_1258782

F067845

LALGVLTACSGLGSVNTGTDAEKAAELARQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADSNMGHTDDLNAFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHSEMGAAFIDYNGTAYVVAVFR

Ga0245003_129879

Ga0245003_1298791

F099269

VHGVLVSVQAGELLLLDDLGDRAGGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV

Ga0245003_135212

Ga0245003_1352122

F077405

LLVAKQRGVFYGFISLCQIKFVKKVFDWLKIIQKQKVRLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029548: Human fecal microbial communities from Shanghai, China - P092V1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences