3300029543: Human fecal microbial communities from Shanghai, China - P083V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029543
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283612 | Ga0244989
• Sample Name: Human fecal microbial communities from Shanghai, China - P083V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 160048083
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F059106	Metagenome	134	N
F062845	Metagenome	130	N
F067845	Metagenome	125	N
F070093	Metagenome	123	N
F080163	Metagenome	115	N
F087334	Metagenome	110	N
F087336	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244989_100369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	67501
Ga0244989_100890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	30040
Ga0244989_101549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14945
Ga0244989_107783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2639
Ga0244989_110814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1888
Ga0244989_112646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1607
Ga0244989_136842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	535
Ga0244989_138963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244989_100369	Ga0244989_10036962	F026489	MRSAGKVLLAEGCSLLVAKENQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0244989_100890	Ga0244989_10089012	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPDDVTVALLLDDSTAMTARLYAPQADSAAAELLDDAAGHSEMGAAFIDYNGTAYVVAVFR
Ga0244989_101549	Ga0244989_10154918	F059106	MHAIVWKIRMILLQTFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV
Ga0244989_107783	Ga0244989_1077834	F070093	FESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPNLLQNIHRM
Ga0244989_110814	Ga0244989_1108143	F080163	MKTIKFLQESFETKERFQQEISIKYSYNRNTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCNAKQFLEIINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGVDPNLEKQGHEDNYVFNLNIESDNQIGFFLQATEL
Ga0244989_112646	Ga0244989_1126463	F087334	PFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ
Ga0244989_136842	Ga0244989_1368422	F087336	VILSDTPISSSMHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIRDDAIGHGRVSDRILAEIEDNHMRERGTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0244989_138963	Ga0244989_1389631	F062845	MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPP