3300029531: Human fecal microbial communities from Shanghai, China - P033V6

Overview

Basic Information

• IMG/M Taxon OID: 3300029531
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283543 | Ga0244920
• Sample Name: Human fecal microbial communities from Shanghai, China - P033V6
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 126562993
• Sequencing Scaffolds: 5
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F032312	Metagenome / Metatranscriptome	180	N
F060985	Metagenome / Metatranscriptome	132	N
F070093	Metagenome	123	N
F073656	Metagenome	120	N
F080163	Metagenome	115	N
F084124	Metagenome	112	Y
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244920_100160	Not Available	86010
Ga0244920_100563	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	34475
Ga0244920_104007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4863
Ga0244920_104195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	4635
Ga0244920_126523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	594

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244920_100160	Ga0244920_1001601	F105375	MKNNETFQTTQHLDKLVTNLGLQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSVMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0244920_100160	Ga0244920_10016016	F080163	MKTIKFLQESFETKEKFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKTNFCNAKQFLESINDFDKILFVIITYMKAYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESQVLDSENELLQERLDLIREEICELIGIDPNLEKQGHEDNYIFNLNIDSDNQIGFFLQATEL
Ga0244920_100160	Ga0244920_10016017	F060985	MSNIDEKVKNNFTIEMRIFENYEKVKYEIIKAIDFLEHSGTAMGMCNIFDSQDHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPYYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0244920_100160	Ga0244920_10016018	F032312	MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYNGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0244920_100563	Ga0244920_10056312	F073656	MTMEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCCKYGLDPLAEGNCSNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0244920_104007	Ga0244920_1040074	F032286	MRSMVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKRTEI
Ga0244920_104195	Ga0244920_1041951	F070093	LAEFCPFRIDPPMEPEQERLFKLYSGSGIQSLPELNPNLI
Ga0244920_126523	Ga0244920_1265231	F084124	LNITALAFARATKENTLPFHGQRNELTVFLAFPVTMAIACFNKLSFSTQTTTLFAPDKLLYRKILWALPKPAIFEKIE