3300029514: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI003283-119

Overview

Basic Information

• IMG/M Taxon OID: 3300029514
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283410 | Ga0244787
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI003283-119
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 158164344
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F078693	Metagenome	116	N
F089054	Metagenome	109	N
F097172	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244787_100033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	263939
Ga0244787_100257	Not Available	85621
Ga0244787_100764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	27385
Ga0244787_100827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	25419
Ga0244787_101447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13003
Ga0244787_101611	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	11600

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244787_100033	Ga0244787_10003326	F097172	MKKNVFKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYKYHLEGYDKNGYPVSGFSKTSFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKGNPEYESYVKFKAQKTGKYVFTIDNLQGTDDKSLKCLNIYICRIAKNGKKYFLEDDLYPDAVGNYGDLYENNYLARLRTILDNYKAEHPEYADVIEYDYNDYTDFVNKRPVDKDKFTIRLKKGHTYVFIIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLAAYSFDMNIEYKK
Ga0244787_100257	Ga0244787_10025728	F089054	MLTLGRFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPWHKHSTYIRLKLREILKVNLTDITIIDIISLP
Ga0244787_100764	Ga0244787_10076411	F068855	VPTVEAQGPQVRKTLALQGLQAEKENENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW
Ga0244787_100827	Ga0244787_10082722	F078693	MVLALVRGAERSFIQADCSLLMSKENQKTTSDFDALDPRERGCSPLS
Ga0244787_101447	Ga0244787_10144711	F074899	MSGRKQWNKQVATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSRTTPEILA
Ga0244787_101611	Ga0244787_10161111	F051936	MKQEGTGQVLFFPLALRGKALGFSVLQEHAVMTPVISIFFATLIIKYLSIHISIKXXXXXXXXQ