3300029508: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012158-36

Overview

Basic Information

• IMG/M Taxon OID: 3300029508
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283453 | Ga0244830
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012158-36
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 122192503
• Sequencing Scaffolds: 3
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067844	Metagenome	125	N
F070093	Metagenome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244830_100199	Not Available	84656
Ga0244830_106051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2611
Ga0244830_108626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1793

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244830_100199	Ga0244830_10019973	F064817	MNIKNLFNRFCKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0244830_100199	Ga0244830_10019982	F044555	MKTTNPSSRITISQNGNQILTTCKVYKEPNYILSMSNEEILELISGLDYIGNLPMVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPGDLVSLSQHHKR
Ga0244830_100199	Ga0244830_10019989	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETLMGMCKIFDNQDYGFWHRVIKPWFQPERFGITHLWFSSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPYRIRILKLALKDLERIKEEYGKD
Ga0244830_100199	Ga0244830_10019990	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWFKLLGVALMILLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0244830_106051	Ga0244830_1060511	F067844	MNTLAAETASAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQ
Ga0244830_108626	Ga0244830_1086263	F070093	LLLAEFCPFRIDPPMEPEQERLFKLYSGSGIHSLPELNPN