3300029507: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005383-51

Overview

Basic Information

• IMG/M Taxon OID: 3300029507
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283439 | Ga0244816
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005383-51
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 118045181
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244816_100181	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	107943
Ga0244816_100436	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	47620
Ga0244816_103601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3386
Ga0244816_105926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2019

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244816_100181	Ga0244816_1001811	F051936	QVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFVMLIIRYLSIHISIKK
Ga0244816_100436	Ga0244816_10043633	F051936	MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISISFAMLIIRYLSIHISIKK
Ga0244816_103601	Ga0244816_1036011	F097493	MYKFYVKNGTAYFYERGVEIDGTVYGIQKDSDILRIKRNIIRQKRNISDKNEDLLSGSVNLPDNKFAETDDNFDMDTEIAKIQHTSIIFKQPTSEQLSQIQAKTYNSMTELKQHVQ
Ga0244816_105926	Ga0244816_1059265	F097493	MYKFYSKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMGVEIAKIQHTDITFEQPTAEQLEQIQAKTYNSMTELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVGGE