3300029503: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI003272-105

Overview

Basic Information

• IMG/M Taxon OID: 3300029503
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283404 | Ga0244781
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI003272-105
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 179378810
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F071325	Metagenome	122	N
F076190	Metagenome	118	Y
F088921	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244781_100738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	35535
Ga0244781_100749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	35057
Ga0244781_101758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15073
Ga0244781_102452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	10517
Ga0244781_103018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	8401

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244781_100738	Ga0244781_10073831	F047126	MANISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRCFHILSKKLQKTC
Ga0244781_100749	Ga0244781_10074925	F088921	VGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAVIRDKMRSK
Ga0244781_101758	Ga0244781_1017581	F042936	VWKTKEGIMKTSGIVDRGEDTIRNVEKVEQERALTPPYLGKVYFRSRLRGKG
Ga0244781_102452	Ga0244781_1024521	F071325	LGFGIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVYRFYLAFEELLSCATAYL
Ga0244781_103018	Ga0244781_10301810	F076190	GGSIIISAANAPTAASRVSGRVWSLVRITIPNDLKSVKIRVEKPQNNSLYPYFQREPL