Sample 3300029493

Overview

Basic Information
IMG/M Taxon OID	3300029493 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133117 \| Gp0283171 \| Ga0244010
Sample Name	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 097_5_2_stool_1
Sequencing Status	Permanent Draft
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	257104755
Sequencing Scaffolds	11
Novel Protein Genes	17
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
Not Available	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F032312	Metagenome / Metatranscriptome	180	N
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F044555	Metagenome / Metatranscriptome	154	N
F055715	Metagenome	138	N
F061388	Metagenome	132	N
F064817	Metagenome	128	N
F068941	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F078822	Metagenome	116	N
F080163	Metagenome	115	N
F089053	Metagenome	109	Y
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F029444

Metagenome

188

F032312

Metagenome / Metatranscriptome

180

F042936

Metagenome

157

F044554

Metagenome

154

F044555

Metagenome / Metatranscriptome

154

F055715

Metagenome

138

F061388

Metagenome

132

F064817

Metagenome

128

F068941

Metagenome

124

F074899

Metagenome / Metatranscriptome

119

F078822

Metagenome

116

F080163

Metagenome

115

F089053

Metagenome

109

F094005

Metagenome / Metatranscriptome

106

F101357

Metagenome / Metatranscriptome

102

F105375

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0244010_1000020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	307946	Open in IMG/M
Ga0244010_1000124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	151201	Open in IMG/M
Ga0244010_1000371	Not Available	84784	Open in IMG/M
Ga0244010_1000374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	84097	Open in IMG/M
Ga0244010_1000491	All Organisms → cellular organisms → Bacteria	70905	Open in IMG/M
Ga0244010_1001686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	23765	Open in IMG/M
Ga0244010_1001886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21134	Open in IMG/M
Ga0244010_1005269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6805	Open in IMG/M
Ga0244010_1014707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	2292	Open in IMG/M
Ga0244010_1037341	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
Ga0244010_1055750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	576	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0244010_1000020

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

307946

Open in IMG/M

Ga0244010_1000124

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

151201

Open in IMG/M

Ga0244010_1000371

Not Available

84784

Open in IMG/M

Ga0244010_1000374

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

84097

Open in IMG/M

Ga0244010_1000491

All Organisms → cellular organisms → Bacteria

70905

Open in IMG/M

Ga0244010_1001686

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

23765

Open in IMG/M

Ga0244010_1001886

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

21134

Open in IMG/M

Ga0244010_1005269

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

6805

Open in IMG/M

Ga0244010_1014707

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium

2292

Open in IMG/M

Ga0244010_1037341

All Organisms → cellular organisms → Bacteria

876

Open in IMG/M

Ga0244010_1055750

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

576

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0244010_1000020	Ga0244010_1000020117	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGAPTPPYLGKVYFRSRLRGK
Ga0244010_1000124	Ga0244010_1000124130	F078822	YQRSYFLSSTFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0244010_1000371	Ga0244010_100037110	F094005	MKKEAIRLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0244010_1000371	Ga0244010_1000371100	F064817	MNIKNLFNRFRKRELELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKPSGKSDMVITEEKYQAAKALVPAHEVSDGFKIPEYITRVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0244010_1000371	Ga0244010_1000371102	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLKEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0244010_1000371	Ga0244010_1000371105	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNINNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKNDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0244010_1000371	Ga0244010_1000371110	F044555	MKTTNPSSRITISQNGNQILTCKVYKELNYILSMSNEEILEFISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLFDTLVDELKGTISRFQAQYKIQEINPDILQNPEDLVSLSQHR
Ga0244010_1000371	Ga0244010_10003716	F080163	MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENYLVNEFKEKKNNFCNVKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLYVHLVQFDFTTSVLIQGFYNYTHKDLSFSTKLESEVSNSEIELLQEKLNLIREEICKLIGVDPNLEKQGHEDNYIFNLNIDSDNQIGFFLQETNL
Ga0244010_1000371	Ga0244010_10003719	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGPEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTGFKLLVASLMLLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIVFLYGLVS
Ga0244010_1000374	Ga0244010_100037448	F044554	VLTGRFIPVLCAGIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRVNFAQALFSSLLFVSNTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFHVL
Ga0244010_1000491	Ga0244010_10004918	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYKWSSTSNINISIGIEGSTVTFNGGSNVTGVLIPTSSKEGGIKKDITVIASEAGSTMSLYMDLTTMPSELKEESFVYELYYNDSTLVTKGNFKDITYASSGVTTLTLFTDRVVNTTTDKYTLYLWFNGKDYTNPNTMQNKTLSFDLYATGKNATLKS
Ga0244010_1001686	Ga0244010_100168619	F055715	LTKANEFDKMNELLIERTAKKFERASKNKLKKFLTNEKFCDKINKLIRVGTAKILDN
Ga0244010_1001886	Ga0244010_100188616	F078822	LSSTFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLDFEELLSCATAYL
Ga0244010_1005269	Ga0244010_10052692	F089053	MEGPRPDKFAFGVRIGRVVDECRPAKGCIRKRIHGSANGQPELSTAEEVNVKNMEAFL
Ga0244010_1014707	Ga0244010_10147073	F061388	MMKKTLTICLGLALILTLCGTFAGALASEVENGIDAIEDAMMKGNTNSVHLNIRSVARGDVISTPYSVLFHEYGHMTDYLIARSGGYGRYSAYSELFQGFDSSGNAIMHRSSSGGLLGRTAKKELEGHLSRIRRYDPNMTRDQAADRLISEAMGKYSMRDRSDISDMFEGAGIGKAYPLGSGHGTNYWSGRDSGKEIFAEITSAEAAHPGSLMAIKEYFPKTYKVYQDMLKARKKK
Ga0244010_1037341	Ga0244010_10373411	F029444	MEVSGQLTGFELEDLKFWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDS
Ga0244010_1055750	Ga0244010_10557501	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSR

Scaffold ID

Protein ID

Family

Sequence

Ga0244010_1000020

Ga0244010_1000020117

F042936

MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGAPTPPYLGKVYFRSRLRGK

Ga0244010_1000124

Ga0244010_1000124130

F078822

YQRSYFLSSTFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL

Ga0244010_1000371

Ga0244010_100037110

F094005

MKKEAIRLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE

Ga0244010_1000371

Ga0244010_1000371100

F064817

MNIKNLFNRFRKRELELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKPSGKSDMVITEEKYQAAKALVPAHEVSDGFKIPEYITRVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI

Ga0244010_1000371

Ga0244010_1000371102

F105375

MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLKEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV

Ga0244010_1000371

Ga0244010_1000371105

F101357

MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNINNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKNDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF

Ga0244010_1000371

Ga0244010_1000371110

F044555

MKTTNPSSRITISQNGNQILTCKVYKELNYILSMSNEEILEFISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLFDTLVDELKGTISRFQAQYKIQEINPDILQNPEDLVSLSQHR

Ga0244010_1000371

Ga0244010_10003716

F080163

MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENYLVNEFKEKKNNFCNVKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLYVHLVQFDFTTSVLIQGFYNYTHKDLSFSTKLESEVSNSEIELLQEKLNLIREEICKLIGVDPNLEKQGHEDNYIFNLNIDSDNQIGFFLQETNL

Ga0244010_1000371

Ga0244010_10003719

F032312

MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGPEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTGFKLLVASLMLLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIVFLYGLVS

Ga0244010_1000374

Ga0244010_100037448

F044554

VLTGRFIPVLCAGIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRVNFAQALFSSLLFVSNTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFHVL

Ga0244010_1000491

Ga0244010_10004918

F068941

MKNNKGLIIGIIGLIIVMIGGTYAYYKWSSTSNINISIGIEGSTVTFNGGSNVTGVLIPTSSKEGGIKKDITVIASEAGSTMSLYMDLTTMPSELKEESFVYELYYNDSTLVTKGNFKDITYASSGVTTLTLFTDRVVNTTTDKYTLYLWFNGKDYTNPNTMQNKTLSFDLYATGKNATLKS

Ga0244010_1001686

Ga0244010_100168619

F055715

LTKANEFDKMNELLIERTAKKFERASKNKLKKFLTNEKFCDKINKLIRVGTAKILDN

Ga0244010_1001886

Ga0244010_100188616

F078822

LSSTFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLDFEELLSCATAYL

Ga0244010_1005269

Ga0244010_10052692

F089053

MEGPRPDKFAFGVRIGRVVDECRPAKGCIRKRIHGSANGQPELSTAEEVNVKNMEAFL

Ga0244010_1014707

Ga0244010_10147073

F061388

MMKKTLTICLGLALILTLCGTFAGALASEVENGIDAIEDAMMKGNTNSVHLNIRSVARGDVISTPYSVLFHEYGHMTDYLIARSGGYGRYSAYSELFQGFDSSGNAIMHRSSSGGLLGRTAKKELEGHLSRIRRYDPNMTRDQAADRLISEAMGKYSMRDRSDISDMFEGAGIGKAYPLGSGHGTNYWSGRDSGKEIFAEITSAEAAHPGSLMAIKEYFPKTYKVYQDMLKARKKK

Ga0244010_1037341

Ga0244010_10373411

F029444

MEVSGQLTGFELEDLKFWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDS

Ga0244010_1055750

Ga0244010_10557501

F074899

MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029493: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 097_5_2_stool_1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences