3300029491: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001846-96

Overview

Basic Information

• IMG/M Taxon OID: 3300029491
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283268 | Ga0244091
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001846-96
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151715421
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F068811	Metagenome	124	N
F087334	Metagenome	110	N
F087335	Metagenome	110	N
F090514	Metagenome	108	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244091_100025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	192783
Ga0244091_100222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	69963
Ga0244091_100228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	68271
Ga0244091_100949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	23174
Ga0244091_101577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	14174
Ga0244091_114179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1658
Ga0244091_120590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1147

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244091_100025	Ga0244091_100025228	F056309	SLSVVPLLLGASDSLSVSYGMEPEQEALSIVSFKD
Ga0244091_100222	Ga0244091_10022210	F087335	MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPVLNETGEPELLIRCVTEESVETVYQRAANYD
Ga0244091_100228	Ga0244091_10022857	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGADSFLFCG
Ga0244091_100949	Ga0244091_1009499	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSSSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ
Ga0244091_101577	Ga0244091_10157713	F068811	MDQDGSEHNICPNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0244091_114179	Ga0244091_1141793	F059106	MHVIAWKIRAILLQIFAWIVDLKARGHLTGYSRKDIKFRQVTIEVHV
Ga0244091_120590	Ga0244091_1205902	F099269	VHGVLLSVQVRELLLLDDLGDRASGASVLASATGDAGVLVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV