Sample 3300029489

Overview

Basic Information
IMG/M Taxon OID	3300029489 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133117 \| Gp0283175 \| Ga0244014
Sample Name	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 098_4_28_stool_1
Sequencing Status	Permanent Draft
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	190702544
Sequencing Scaffolds	17
Novel Protein Genes	17
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii → Faecalibacterium prausnitzii M21/2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F047125	Metagenome / Metatranscriptome	150	N
F056623	Metagenome	137	N
F067844	Metagenome	125	N
F067845	Metagenome	125	N
F074899	Metagenome / Metatranscriptome	119	N
F077320	Metagenome	117	N
F078693	Metagenome	116	N
F087213	Metagenome	110	N
F089053	Metagenome	109	Y
F101355	Metagenome	102	N
F102166	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F032286

Metagenome / Metatranscriptome

180

F047125

Metagenome / Metatranscriptome

150

F056623

Metagenome

137

F067844

Metagenome

125

F067845

Metagenome

125

F074899

Metagenome / Metatranscriptome

119

F077320

Metagenome

117

F078693

Metagenome

116

F087213

Metagenome

110

F089053

Metagenome

109

F101355

Metagenome

102

F102166

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0244014_1000029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	186493	Open in IMG/M
Ga0244014_1000443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	41409	Open in IMG/M
Ga0244014_1002230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	11343	Open in IMG/M
Ga0244014_1003358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7807	Open in IMG/M
Ga0244014_1003888	Not Available	6885	Open in IMG/M
Ga0244014_1004154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6516	Open in IMG/M
Ga0244014_1008037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3483	Open in IMG/M
Ga0244014_1008197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3418	Open in IMG/M
Ga0244014_1009050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3092	Open in IMG/M
Ga0244014_1009340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2990	Open in IMG/M
Ga0244014_1009450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2956	Open in IMG/M
Ga0244014_1024689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1152	Open in IMG/M
Ga0244014_1037619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii → Faecalibacterium prausnitzii M21/2	798	Open in IMG/M
Ga0244014_1042669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	713	Open in IMG/M
Ga0244014_1043521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	702	Open in IMG/M
Ga0244014_1043737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	699	Open in IMG/M
Ga0244014_1046369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	664	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0244014_1000029

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

186493

Open in IMG/M

Ga0244014_1000443

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

41409

Open in IMG/M

Ga0244014_1002230

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

11343

Open in IMG/M

Ga0244014_1003358

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

7807

Open in IMG/M

Ga0244014_1003888

Not Available

6885

Open in IMG/M

Ga0244014_1004154

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

6516

Open in IMG/M

Ga0244014_1008037

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

3483

Open in IMG/M

Ga0244014_1008197

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

3418

Open in IMG/M

Ga0244014_1009050

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

3092

Open in IMG/M

Ga0244014_1009340

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

2990

Open in IMG/M

Ga0244014_1009450

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

2956

Open in IMG/M

Ga0244014_1024689

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

1152

Open in IMG/M

Ga0244014_1037619

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii → Faecalibacterium prausnitzii M21/2

798

Open in IMG/M

Ga0244014_1042669

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

713

Open in IMG/M

Ga0244014_1043521

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

702

Open in IMG/M

Ga0244014_1043737

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

699

Open in IMG/M

Ga0244014_1046369

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

664

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0244014_1000029	Ga0244014_10000297	F032286	MVKWVCQIVTPVRHRALIFDARLFTGNTADDVLVTGSTFRFCRLVCLCVKRRNIILNGKRRSLLNSTLFRADNHAGQKAISPFSLALIFTFAFAALSERRSCPEDRSRRFVPVGTLALSRSWRLLRWGTYPVRTVIQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIEGRTPLCSQNSPFRNGSKTCAWSAV
Ga0244014_1000443	Ga0244014_100044313	F089053	MILCRAKRALFGFGSRNGCVVGGYRPIKGCIKKRIYESATGQPELSTAEEVNVKNMEVF
Ga0244014_1002230	Ga0244014_100223012	F026489	LFLQGKVLLAEGCSLLTPKENQKSASDFDALEPRKRGYSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0244014_1003358	Ga0244014_10033585	F026489	LLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF
Ga0244014_1003888	Ga0244014_10038881	F077320	MKRKGMHRRRKLVLLAVLLIMVGIAVWRIWQTPRPVVLHRQDAWLSSAEPEMVDVLPDNTFTAELPEKIDGRLLYIRDYSASGHYQIVWEGVSAEAAEVYLNALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEESTPTPLPEWLADW
Ga0244014_1004154	Ga0244014_100415410	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSKMC
Ga0244014_1008037	Ga0244014_10080371	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNVFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0244014_1008197	Ga0244014_10081971	F026489	LTPKENQKSASDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF
Ga0244014_1009050	Ga0244014_10090501	F026489	KGRGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKGRATPEKTEDSRLFGVKIF
Ga0244014_1009340	Ga0244014_10093402	F026489	VKTPPPGGEDSACRGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0244014_1009450	Ga0244014_10094503	F047125	MDVALLLMVFGVMLSGFRAADALDHMRKEILRQEGKRRGWWS
Ga0244014_1024689	Ga0244014_10246891	F067844	MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQG
Ga0244014_1037619	Ga0244014_10376191	F101355	IEPPFQHGIADMAFWFIQWYLPSAQPLQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0244014_1042669	Ga0244014_10426691	F056623	VRAEIPATQKRDWKPLIFPLAAAVLNLGALALWLTLPSCVTPENSGWMGRFALCIVVQSVSLCAAIGSIVSAMRRKPPKPVAVADEPELRRRLVEVEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKV
Ga0244014_1043521	Ga0244014_10435212	F078693	MWNIGSFSFERLHAPVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS
Ga0244014_1043737	Ga0244014_10437371	F102166	HAIMEETWRISPEMRVFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV
Ga0244014_1046369	Ga0244014_10463691	F087213	MTATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLATRQRIYGIASADDLHAILTGYFDPNDAAYTADASLDARLQAILAACGLNPEDYDISVIRNLGGMIEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV

Scaffold ID

Protein ID

Family

Sequence

Ga0244014_1000029

Ga0244014_10000297

F032286

MVKWVCQIVTPVRHRALIFDARLFTGNTADDVLVTGSTFRFCRLVCLCVKRRNIILNGKRRSLLNSTLFRADNHAGQKAISPFSLALIFTFAFAALSERRSCPEDRSRRFVPVGTLALSRSWRLLRWGTYPVRTVIQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIEGRTPLCSQNSPFRNGSKTCAWSAV

Ga0244014_1000443

Ga0244014_100044313

F089053

MILCRAKRALFGFGSRNGCVVGGYRPIKGCIKKRIYESATGQPELSTAEEVNVKNMEVF

Ga0244014_1002230

Ga0244014_100223012

F026489

LFLQGKVLLAEGCSLLTPKENQKSASDFDALEPRKRGYSPLLTPKKWATPEKTEDSRLFGVKIF

Ga0244014_1003358

Ga0244014_10033585

F026489

LLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF

Ga0244014_1003888

Ga0244014_10038881

F077320

MKRKGMHRRRKLVLLAVLLIMVGIAVWRIWQTPRPVVLHRQDAWLSSAEPEMVDVLPDNTFTAELPEKIDGRLLYIRDYSASGHYQIVWEGVSAEAAEVYLNALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEESTPTPLPEWLADW

Ga0244014_1004154

Ga0244014_100415410

F074899

MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSKMC

Ga0244014_1008037

Ga0244014_10080371

F067845

MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNVFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR

Ga0244014_1008197

Ga0244014_10081971

F026489

LTPKENQKSASDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF

Ga0244014_1009050

Ga0244014_10090501

F026489

KGRGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKGRATPEKTEDSRLFGVKIF

Ga0244014_1009340

Ga0244014_10093402

F026489

VKTPPPGGEDSACRGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF

Ga0244014_1009450

Ga0244014_10094503

F047125

MDVALLLMVFGVMLSGFRAADALDHMRKEILRQEGKRRGWWS

Ga0244014_1024689

Ga0244014_10246891

F067844

MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQG

Ga0244014_1037619

Ga0244014_10376191

F101355

IEPPFQHGIADMAFWFIQWYLPSAQPLQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA

Ga0244014_1042669

Ga0244014_10426691

F056623

VRAEIPATQKRDWKPLIFPLAAAVLNLGALALWLTLPSCVTPENSGWMGRFALCIVVQSVSLCAAIGSIVSAMRRKPPKPVAVADEPELRRRLVEVEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKV

Ga0244014_1043521

Ga0244014_10435212

F078693

MWNIGSFSFERLHAPVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS

Ga0244014_1043737

Ga0244014_10437371

F102166

HAIMEETWRISPEMRVFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV

Ga0244014_1046369

Ga0244014_10463691

F087213

MTATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLATRQRIYGIASADDLHAILTGYFDPNDAAYTADASLDARLQAILAACGLNPEDYDISVIRNLGGMIEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029489: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 098_4_28_stool_1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences