3300029484: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001871-18

Overview

Basic Information

• IMG/M Taxon OID: 3300029484
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283293 | Ga0244116
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001871-18
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 156657382
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F056309	Metagenome	137	N
F062845	Metagenome	130	N
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F076064	Metagenome	118	N
F078693	Metagenome	116	N
F087334	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244116_100200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	86350
Ga0244116_100555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	40885
Ga0244116_101418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18054
Ga0244116_101569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	16287
Ga0244116_101597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	16080
Ga0244116_102480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	10297
Ga0244116_106791	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	3096
Ga0244116_108351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2398
Ga0244116_118386	Not Available	1047
Ga0244116_119682	Not Available	980
Ga0244116_132783	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	601

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244116_100200	Ga0244116_10020073	F062845	MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIINGLLNAVPSRTCT
Ga0244116_100555	Ga0244116_10055530	F044554	VYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLCFSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0244116_101418	Ga0244116_1014185	F042936	VWKTKEGIMKTSGIVDRGEDTIRNVEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0244116_101569	Ga0244116_1015695	F087334	MTSRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCRAAALFEYREKHQ
Ga0244116_101597	Ga0244116_1015977	F078693	LRADGAGLERFFIKANCSLLMSKENQKTTSDFDALDPRERGYSPLSDPKEEVETEKS
Ga0244116_102480	Ga0244116_1024804	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELARQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTNNLNAFLYWSGCYGVPDDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0244116_106791	Ga0244116_1067914	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRLNETRRHPMPVLKLY
Ga0244116_108351	Ga0244116_1083514	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGRKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK
Ga0244116_118386	Ga0244116_1183861	F042095	SDGSYRIVFRSLDIEYKKNPDDTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTMYVNGGIPVDKLSRSKKLIYINLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLKINPGPSDMWNYFDINTLPFFEVDKINPNITDFCFLNDWASGERGTGWNDDNMSGRGLEHLTGFFAANSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNVIYPTENQRPSGTEQAPE
Ga0244116_119682	Ga0244116_1196822	F056309	TPSLSVVPLLLGDSDSLSVSYGMEPEQEALAIVSFKD
Ga0244116_132783	Ga0244116_1327831	F076064	VGTNGEEGFRHHISEELKKTIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPCHVVANDEAYYAAMKGISLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKPALKFY