3300029483: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001857-108

Overview

Basic Information

• IMG/M Taxon OID: 3300029483
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283279 | Ga0244102
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001857-108
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 185156118
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F032286	Metagenome / Metatranscriptome	180	Y
F055775	Metagenome	138	N
F073656	Metagenome	120	N
F078822	Metagenome	116	N
F087336	Metagenome	110	N
F089053	Metagenome	109	Y
F092228	Metagenome	107	N
F099451	Metagenome	103	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244102_100272	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	81526
Ga0244102_100436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens	58349
Ga0244102_100658	Not Available	44130
Ga0244102_101045	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	28548
Ga0244102_101598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	18097
Ga0244102_102507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11147
Ga0244102_104638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5634
Ga0244102_104798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	5427
Ga0244102_108253	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3079

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244102_100272	Ga0244102_10027233	F099451	MEIKNVGQLRKIIENLSDDYEIEMRIRRKLTEEELKHCRYPYPYDTKYLTLEFDDIGVSSKVLCLGVTSNN
Ga0244102_100436	Ga0244102_1004366	F029444	MEVSEQLTGFEPEDLMSWTVSNLQSPFREDFSLKKSGIIAEKESQIFGRRFVGFDS
Ga0244102_100658	Ga0244102_10065831	F055775	MAQIAQQGNLVIEVTTTAAALDGATNKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIHIINANSGAVAAIALN
Ga0244102_101045	Ga0244102_1010458	F073656	MTMEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0244102_101598	Ga0244102_1015983	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIEDIKFDNQIYYINISDGNLYTAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANLWVKGYLIDQLAIS
Ga0244102_102507	Ga0244102_1025075	F032286	VTPVRHRTLVFDTRLFAGNATDNTLVTGGTFRFCRLMCPCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTILPFSLALIFTFDFAALSERRSCPEDRFRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKIILAKNIALSRISKRSENAPKNADFHAYGQDRKGAEI
Ga0244102_104638	Ga0244102_1046382	F089053	MEGPRPDKFAFGVRIGRVVDGCRPVKGCITKWIHGSANGQPELFTTEEVNAKNMEVFL
Ga0244102_104798	Ga0244102_1047988	F078822	SSTFFDIFLNFPNAFLKAFYPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0244102_108253	Ga0244102_1082532	F087336	MVCFLTGNQRRAATKERIKDDAIGRGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0244102_127485	Ga0244102_1274853	F101356	IPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ