3300029482: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001875-22

Overview

Basic Information

• IMG/M Taxon OID: 3300029482
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283297 | Ga0244120
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001875-22
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 156730072
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola vulgatus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F051936	Metagenome	143	N
F078004	Metagenome	117	N
F080163	Metagenome	115	N
F087335	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244120_100519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	48077
Ga0244120_101530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16214
Ga0244120_103034	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola vulgatus	6857
Ga0244120_110596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1838

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244120_100519	Ga0244120_1005197	F047126	LFPKAYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETNDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0244120_101530	Ga0244120_1015308	F042936	VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPSYLGKVYFRSWLRGKG
Ga0244120_103034	Ga0244120_1030341	F051936	GFSVLQEHAVMTPVIRIFFVMLIVRYLSIHISIKK
Ga0244120_110596	Ga0244120_1105963	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESVNFRINQRNIKDFYEAMQNFENSLVDEFKEKKTNFCNAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLYVHLVQFDFTTSVLIQGFYNYNHRDLSFSTKLESQVLDSENELLQEKLNLIREEICELIGVDPNLEKQGHEDNYVFNLNIESDNQIGFFLQEIKL
Ga0244120_121884	Ga0244120_1218843	F087335	MLELYFNDGNLLPKNREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIRPVLNEA
Ga0244120_134997	Ga0244120_1349971	F078004	RIRLPALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVTGVLAAHHDVSLAAQTVLIIGTIFHNAF