3300029469: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001926-13

Overview

Basic Information

• IMG/M Taxon OID: 3300029469
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283345 | Ga0244168
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001926-13
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 114212648
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062845	Metagenome	130	N
F067845	Metagenome	125	N
F073656	Metagenome	120	N
F078693	Metagenome	116	N
F089053	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244168_100086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	142265
Ga0244168_100965	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	22609
Ga0244168_101011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	21594
Ga0244168_103347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4454
Ga0244168_105769	Not Available	2212
Ga0244168_106769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1820

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244168_100086	Ga0244168_10008645	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDNLNHFLFWSGCYGVPDDVTVALLLDDSAAMTAWLYAPQADSAAAKLLEDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0244168_100965	Ga0244168_1009654	F073656	MTMEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0244168_101011	Ga0244168_10101116	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPSRSC
Ga0244168_103347	Ga0244168_1033473	F089053	LFRFGSRNGCVVGGCRLIKGCIRKWIHGFAYGQPELSTAKEANVKKMEVIL
Ga0244168_105769	Ga0244168_1057693	F078693	MVLALVRGAERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDP
Ga0244168_106769	Ga0244168_1067694	F078693	MVLAPVRGAERFFIKANCSLLMSKENQKTTSDFDALDPRERGYSPLXXXXXXXX