Sample 3300029462

Overview

Basic Information
IMG/M Taxon OID	3300029462 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133130 \| Gp0283270 \| Ga0244093
Sample Name	Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001848-98
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	112063187
Sequencing Scaffolds	10
Novel Protein Genes	15
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:882	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	China: Shanghai
Coordinates	Lat. (^o)	31.2123446	Long. (^o)	121.4684853	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F047126	Metagenome	150	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F078822	Metagenome	116	N
F080163	Metagenome	115	N
F088914	Metagenome	109	N
F088921	Metagenome	109	N
F090513	Metagenome	108	N
F090515	Metagenome	108	N
F094005	Metagenome / Metatranscriptome	106	N
F099269	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F032312

Metagenome / Metatranscriptome

180

F044555

Metagenome / Metatranscriptome

154

F047126

Metagenome

150

F056309

Metagenome

137

F059106

Metagenome

134

F060985

Metagenome / Metatranscriptome

132

F064817

Metagenome

128

F078822

Metagenome

116

F080163

Metagenome

115

F088914

Metagenome

109

F088921

Metagenome

109

F090513

Metagenome

108

F090515

Metagenome

108

F094005

Metagenome / Metatranscriptome

106

F099269

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0244093_100242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	52613	Open in IMG/M
Ga0244093_100452	All Organisms → cellular organisms → Bacteria	32047	Open in IMG/M
Ga0244093_100570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	25006	Open in IMG/M
Ga0244093_100605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	23511	Open in IMG/M
Ga0244093_100751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18571	Open in IMG/M
Ga0244093_101069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	12804	Open in IMG/M
Ga0244093_101554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	8804	Open in IMG/M
Ga0244093_102067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	6814	Open in IMG/M
Ga0244093_109694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:882	1702	Open in IMG/M
Ga0244093_112349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1387	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0244093_100242

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

52613

Open in IMG/M

Ga0244093_100452

All Organisms → cellular organisms → Bacteria

32047

Open in IMG/M

Ga0244093_100570

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

25006

Open in IMG/M

Ga0244093_100605

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

23511

Open in IMG/M

Ga0244093_100751

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

18571

Open in IMG/M

Ga0244093_101069

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

12804

Open in IMG/M

Ga0244093_101554

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA

8804

Open in IMG/M

Ga0244093_102067

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

6814

Open in IMG/M

Ga0244093_109694

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:882

1702

Open in IMG/M

Ga0244093_112349

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

1387

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0244093_100242	Ga0244093_10024214	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPDTPKENIKNPGEFIVFSAWYAAKALEMDVK
Ga0244093_100452	Ga0244093_10045231	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0244093_100452	Ga0244093_10045244	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLAQHHKR
Ga0244093_100452	Ga0244093_10045248	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGVDPNLEKQGHEENYIFNLNIDSDNQIGFFLQVTEL
Ga0244093_100452	Ga0244093_10045250	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSGTAMGMCKIFDNQDHGFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRIRVLRLALKDLERIKEEYGKD
Ga0244093_100452	Ga0244093_10045251	F032312	MPKIKDYDEDLSAPKILRRRDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0244093_100452	Ga0244093_10045253	F094005	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRITNLEGQFTRLDGKGNAIILPCTPENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0244093_100570	Ga0244093_10057015	F088921	LGAIIRLYKIGTGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSK
Ga0244093_100605	Ga0244093_10060510	F090513	MEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0244093_100751	Ga0244093_1007511	F078822	PNAFLKAFHPHALRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0244093_101069	Ga0244093_10106912	F047126	MTNISQTQAGFKSKSLGTLCGFQGFLTQNPAALVETDDIFDVSDTPSGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLRYFHILSKKLQKTC
Ga0244093_101554	Ga0244093_1015544	F099269	LFVHGVLLSVQVGELLLLDDLGDRASGASVLASATGDAGVLVGDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
Ga0244093_102067	Ga0244093_1020671	F056309	VRNTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALAIVSFKD
Ga0244093_109694	Ga0244093_1096941	F059106	HAIVWKIRVILLQIFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0244093_112349	Ga0244093_1123493	F090515	RDIPGSVPRKRDNMRCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVSAFTALLCRHIGFIRTFLKS

Scaffold ID

Protein ID

Family

Sequence

Ga0244093_100242

Ga0244093_10024214

F088914

VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPDTPKENIKNPGEFIVFSAWYAAKALEMDVK

Ga0244093_100452

Ga0244093_10045231

F064817

MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV

Ga0244093_100452

Ga0244093_10045244

F044555

MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLAQHHKR

Ga0244093_100452

Ga0244093_10045248

F080163

MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGVDPNLEKQGHEENYIFNLNIDSDNQIGFFLQVTEL

Ga0244093_100452

Ga0244093_10045250

F060985

MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSGTAMGMCKIFDNQDHGFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRIRVLRLALKDLERIKEEYGKD

Ga0244093_100452

Ga0244093_10045251

F032312

MPKIKDYDEDLSAPKILRRRDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS

Ga0244093_100452

Ga0244093_10045253

F094005

MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRITNLEGQFTRLDGKGNAIILPCTPENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE

Ga0244093_100570

Ga0244093_10057015

F088921

LGAIIRLYKIGTGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSK

Ga0244093_100605

Ga0244093_10060510

F090513

MEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT

Ga0244093_100751

Ga0244093_1007511

F078822

PNAFLKAFHPHALRFPAAFLLVHRFYLAFEELLSCATAYL

Ga0244093_101069

Ga0244093_10106912

F047126

MTNISQTQAGFKSKSLGTLCGFQGFLTQNPAALVETDDIFDVSDTPSGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLRYFHILSKKLQKTC

Ga0244093_101554

Ga0244093_1015544

F099269

LFVHGVLLSVQVGELLLLDDLGDRASGASVLASATGDAGVLVGDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV

Ga0244093_102067

Ga0244093_1020671

F056309

VRNTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALAIVSFKD

Ga0244093_109694

Ga0244093_1096941

F059106

HAIVWKIRVILLQIFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV

Ga0244093_112349

Ga0244093_1123493

F090515

RDIPGSVPRKRDNMRCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVSAFTALLCRHIGFIRTFLKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029462: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001848-98

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences