| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029449 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133104 | Gp0282262 | Ga0243128 |
| Sample Name | Sediment microbial communities from Yellow Sea, Weihai, China - HGD.1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Shandong University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 291499191 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 27 |
| Associated Families | 22 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 4 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112 | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin060 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 1 |
| All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4 | 1 |
| All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Sediment Microbial Communities From Yellow Sea, Weihai, China |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Sediment → Sediment Microbial Communities From Yellow Sea, Weihai, China |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | China: Weihai | |||||||
| Coordinates | Lat. (o) | 37.31 | Long. (o) | 122.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F025922 | Metagenome / Metatranscriptome | 199 | Y |
| F033445 | Metagenome / Metatranscriptome | 177 | N |
| F039153 | Metagenome / Metatranscriptome | 164 | Y |
| F044784 | Metagenome | 154 | Y |
| F045728 | Metagenome / Metatranscriptome | 152 | Y |
| F047968 | Metagenome | 149 | Y |
| F050310 | Metagenome | 145 | Y |
| F051165 | Metagenome / Metatranscriptome | 144 | Y |
| F058179 | Metagenome / Metatranscriptome | 135 | Y |
| F059891 | Metagenome / Metatranscriptome | 133 | Y |
| F061655 | Metagenome / Metatranscriptome | 131 | Y |
| F064746 | Metagenome / Metatranscriptome | 128 | N |
| F069964 | Metagenome | 123 | N |
| F071990 | Metagenome / Metatranscriptome | 121 | Y |
| F072820 | Metagenome / Metatranscriptome | 121 | Y |
| F076128 | Metagenome / Metatranscriptome | 118 | N |
| F079636 | Metagenome | 115 | Y |
| F079672 | Metagenome / Metatranscriptome | 115 | Y |
| F086646 | Metagenome / Metatranscriptome | 110 | Y |
| F091989 | Metagenome / Metatranscriptome | 107 | Y |
| F103319 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0243128_1000556 | Not Available | 16297 | Open in IMG/M |
| Ga0243128_1000895 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 13107 | Open in IMG/M |
| Ga0243128_1001705 | Not Available | 9568 | Open in IMG/M |
| Ga0243128_1001831 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 9223 | Open in IMG/M |
| Ga0243128_1003361 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia | 6660 | Open in IMG/M |
| Ga0243128_1005071 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112 | 5298 | Open in IMG/M |
| Ga0243128_1007466 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 4250 | Open in IMG/M |
| Ga0243128_1007575 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 4217 | Open in IMG/M |
| Ga0243128_1021838 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin060 | 2220 | Open in IMG/M |
| Ga0243128_1023791 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 2104 | Open in IMG/M |
| Ga0243128_1024438 | All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4 | 2069 | Open in IMG/M |
| Ga0243128_1027199 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 1932 | Open in IMG/M |
| Ga0243128_1035792 | Not Available | 1618 | Open in IMG/M |
| Ga0243128_1036809 | All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon | 1588 | Open in IMG/M |
| Ga0243128_1039417 | Not Available | 1516 | Open in IMG/M |
| Ga0243128_1058262 | Not Available | 1154 | Open in IMG/M |
| Ga0243128_1060349 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112 | 1125 | Open in IMG/M |
| Ga0243128_1068460 | Not Available | 1024 | Open in IMG/M |
| Ga0243128_1071209 | All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon | 994 | Open in IMG/M |
| Ga0243128_1079957 | All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon | 908 | Open in IMG/M |
| Ga0243128_1086729 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. | 852 | Open in IMG/M |
| Ga0243128_1086750 | Not Available | 852 | Open in IMG/M |
| Ga0243128_1100743 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 761 | Open in IMG/M |
| Ga0243128_1118182 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 672 | Open in IMG/M |
| Ga0243128_1135894 | Not Available | 597 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0243128_1000556 | Ga0243128_10005565 | F044784 | MKRGWEVELSNGVILRESDLDWKKVPKNQIVRLSLFYDGRHWDLMGKEAYFVKYRASMVPGIQDSFRIERRTIGFYEGANKVCYHVDEFTGKFNIEVINTNE |
| Ga0243128_1000895 | Ga0243128_100089519 | F020363 | MWRWRRVAVARVFALVVRCRIKRLLLYSRVGKNRDTKRESPAGAGAGRTANQLTFLFSQKILAVRSANDIYRPVIGRYC |
| Ga0243128_1001705 | Ga0243128_100170516 | F025922 | MASRNRIIYGSQSVWCNGEILYRVQTLGSTTTFTSEDIFEIGHLDIIDVVDDVPSVAVTLNTNDWGDVKTFAVLAQVPSAKLSMDATATDTNANLAIVSGTLLTETGTYLHGVSLADFAVTCGNLTGVSVWAPVQSECDLGTLATNIDQTMYMDKVYINSLEFSYTTGANATENYGAETDQKMWLLNTGRFINWEEYDY |
| Ga0243128_1001831 | Ga0243128_10018319 | F020363 | MWRWRRVAVARVFAIVVRCRVMRLLLYSRVGKNRDTRRESPAGTGAGRTADHLTVLFSQKVLAVREANDIYRPVTASIFLLSTDF |
| Ga0243128_1003361 | Ga0243128_10033619 | F051165 | MTTSFQKALAIMASVASVLAGVVTIASFLSGEDVSLPPSLTTPSSESQPIIIHARVVFIEKNMTYAIDYDKNLILLNESTIIV |
| Ga0243128_1005071 | Ga0243128_10050712 | F103319 | MADQYNSIGHHPKSTYMTSEGHALHNISGLDLIIDIAGVYFPLRSINYAANHNVTDEHGTGTHDPVALTNQEHTYTGTFTYASFLVTGENVLTQKDVLALTQLLQDQADEGVSKYFDIYIIEVQGKRTPGTGTTFEEQVEAALQNESMVGYIEALVDCKVTKVNRDIPEKNTVVSSREFKYSYKLPR |
| Ga0243128_1007466 | Ga0243128_10074664 | F020363 | MQLGITFGGMWRWRRVAVARVFALVVRFRVMMLFVYCRVGKNRDTRRESPAGAGAGRTADHITVLFSQKILAVREANDIYRPVTASIFLLSTYF |
| Ga0243128_1007575 | Ga0243128_10075755 | F091989 | MRLSAYAHDIINRARANGYATDASKASDPLIRPFGEHDEQKGTLMSLQGSTLALCWVNSEGKAVPFNEAEFNSVQKEIAVLQSKVDHNTKILDALDAKVAELGLTEFSLAKLKGQKEKLRMEINQIRAEENDSLRSRWESVVSLGGNRGTYDALPEVIEARAKAAAQIEPIEAEILALDRQIRDLESILSKFKR |
| Ga0243128_1021838 | Ga0243128_10218382 | F076128 | MLIEILILLFFLVASLYLAYQFRSCGHQMVTLQGSNATLSADLEKTREENLKLMSELQKTQADLALTRGELEKTRAALNSCTDAINGGS |
| Ga0243128_1023791 | Ga0243128_10237913 | F039153 | MKYTVITPAATKQYNTAVLFLNNSHGARRLNFSPFHKEVKQWAKHQGYSAKLYLRSAAIECNNPDLPKESKLFVVDLIQIIANGQAYLVAIDTLGPSENNLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEYNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARNERA |
| Ga0243128_1024438 | Ga0243128_10244381 | F059891 | MDAAGFLKLKRGYWVIESALHHALDVTLREDHSRVRYPKAAFVLSLFRRIVVSFAQVWVAHCRKLNPKSRVTTRKFQQRFSRADGGPSRLHALMFAKSPVSWLSPA |
| Ga0243128_1027199 | Ga0243128_10271992 | F064746 | MAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWVNSSGDVSKYKPDDLEDQFGIPDGAYDWTGLADYGAFDYRSGEPSGSMTKYGWANIFVLKPDDDLSDSSSIDILKHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSLGAIAFFLDDNTVALIGVETTNDFGMSAWDVINSITVN |
| Ga0243128_1027339 | Ga0243128_10273392 | F020363 | MTHNVRRYVALASRCIGTVARVFALVMRCRVMLLLLYSRDGKNRDTRRESPAGAGAGRTADHLVVLFSQKILAVRSANDIYRPVSKRIYYEDNELH |
| Ga0243128_1035792 | Ga0243128_10357922 | F071990 | MAEPTTRFRAWPIATTAAELDTSAKRLAAVSGESTVSTGDGNELDFGTIDISSGAANSAVKVCAWDVTADGGNTTVETFKLWLSSNGFDQAGTVVKFQPLSGGDNAAPSNTENYAANAVVGSYTWADMPEAEPGTQNVWPTDEGSSMALSTTSDDVVFWAEYLAVASGETTGTYKGTTTDYEFQHSF |
| Ga0243128_1036809 | Ga0243128_10368092 | F047968 | MGIGVVDKHKEKLIKAISEEITVLFEKILNYAELSVANREQYKVLRSRILRLGNNSIRNLTREINSRYNIKYNPPAETIIEIKNDREAKV |
| Ga0243128_1039417 | Ga0243128_10394171 | F033445 | MEKIILNRRLILLSLITALMLWATPLQANDVCFSEGDASKIVVELERGRFCEQQVVQYEVSVRELSIQIESLNTQVETMSKKFDETMKQLEAERKIADEKDKARLEEIKAAGKPQWTMLFGGFGAGALLIGALALLL |
| Ga0243128_1058262 | Ga0243128_10582621 | F050310 | MASMQSFIVGIVLVGVTLVIGIFISSEIADQMDDSSAEQNAANDLVTALSGGSAWITILVVVGFATIVLGMLTSGLGARKKEESIYTY |
| Ga0243128_1060349 | Ga0243128_10603492 | F103319 | MADQYNSIGHHPKSTYMTSEGYALHNISGLDLIIDIAGVYFPLRSINYAANHNVTDEHGTGTHDPVALTSQEHTYSGSFTYASFLVTGENVLTQKDVLTLSNRLQDQADEGLSKYFDIYIIEVQGKRTPGAGTTFEEQVEAALQNESMVGYIEALVDCKVTKVNRDIPEKNTVVSSREFKYSYKLPR |
| Ga0243128_1068460 | Ga0243128_10684601 | F072820 | MKPLHQITVDAVTIRGIIDYLEKSVEPVGLHELAMTQHISNGTALRLCRILEKATIIEHPVVTRVVMGASQEVPQLAWQLTKPFFLGGCVYNAEELAGGMA |
| Ga0243128_1071209 | Ga0243128_10712092 | F079636 | GYTIDNPNVTAADGTITTLGETQVLGFDLTGNDSLVMPIRKEYEAHDDPTLLRRQKQGFFGWAELGFACLDSRMLGMGIIDRSL |
| Ga0243128_1079957 | Ga0243128_10799572 | F086646 | MNFIFRIQNHYFEKGTPWVELDKIKQRSWFLSVDIEDDGAVPCYDTVSELRLSKGVAFKSVKILTGKTQETHPYWEALLDMSYSNSTELRDVTFKDLPGESGIYMLNIWFDYDAEELNFGDNFKKLCEYHHKWDDGWICSKCGVRRADWIESDIKTTTREESY |
| Ga0243128_1083161 | Ga0243128_10831611 | F061655 | MIDTLKLMLNEYEITDNSEIRVQPASYELGTGSKVEYPLFQTPSHGAHYGSKAYLNADNWNLTLKPLPAGNRATGAFLQLSIPKNYYGSNFYSVGEEGTKAVLSKVEGELKEKGVHTSLIEADMSRVDTFKNIE |
| Ga0243128_1086729 | Ga0243128_10867294 | F058179 | MTAENIALALWLAFIALGVVCIYLLSTAVVDAATLSMSGSCTGQGFTNITMEADLLVAAINQTVNGTTWQIWGAPV |
| Ga0243128_1086750 | Ga0243128_10867501 | F071990 | MAEPTTRFRDWPIATTVAELDTAAERLAAVASESVVSTGDGNELDFGTIDISGGAANSAVKMCAWDVTADGGNTTVETFKLWLSSNGFDIAGTVAKFQPLSGGDNAAPSNTENYVANAVVGSYTWADMPEAEPGTQNVYPTDEGSSMALSTTSDDVVFWAEYL |
| Ga0243128_1100743 | Ga0243128_11007431 | F079672 | IIRERYENGILVERTVEGSNTTPWHWLTLVVHTVIAISLVALVAISIHDSLALRAIQSEEDA |
| Ga0243128_1118182 | Ga0243128_11181821 | F045728 | MSLASVPRESSGQNVIPLMAAQAAPAPAGDSLLVSRF |
| Ga0243128_1135894 | Ga0243128_11358941 | F069964 | MDIRQLREEKPKLGWLAEVRFNILHNHRKLDELEVLVGAHLKAAGPFKVATRQNFFEFSPDGQRVNLVIREGRKPEGLPYQAVPEAVQLFCNEAIILHKNQHLFWHLTEDEVRQVAAEFRDVAGSGSILV |
| ⦗Top⦘ |