3300029445: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 027_10_27_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029445
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282902 | Ga0243741
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 027_10_27_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 289896627
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F050793	Metagenome	145	N
F056623	Metagenome	137	N
F056682	Metagenome	137	Y
F058154	Metagenome	135	N
F068941	Metagenome	124	N
F076190	Metagenome	118	Y
F081354	Metagenome	114	Y
F082715	Metagenome / Metatranscriptome	113	N
F087334	Metagenome	110	N
F089005	Metagenome	109	N
F097172	Metagenome / Metatranscriptome	104	Y
F101193	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243741_1000013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	364575
Ga0243741_1000188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	119726
Ga0243741_1000774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	47426
Ga0243741_1002116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	19902
Ga0243741_1007194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	5738
Ga0243741_1014554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2672
Ga0243741_1017961	All Organisms → cellular organisms → Bacteria	2151
Ga0243741_1019682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1951
Ga0243741_1024120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1578
Ga0243741_1028430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1338
Ga0243741_1032939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1158
Ga0243741_1041421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	928
Ga0243741_1052777	Not Available	733
Ga0243741_1061835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	629

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243741_1000013	Ga0243741_1000013211	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEKGIKKDITVKASEAGSTMSLYMELTTMPNELKEESFVYELYYNDSTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG
Ga0243741_1000188	Ga0243741_10001882	F081354	LIFGQTKRALDLVRENQQSSAHNFVKDFSSFFPESRRRSPLKKGAVATIPLEYGKAEVQTLFEPLQATISSMELPKNFENKKLPNTLRRLAFLPFHL
Ga0243741_1000774	Ga0243741_100077445	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAAPFEYREKHQ
Ga0243741_1002116	Ga0243741_100211624	F089005	LILKAEKTFKKCLTKSKQRSIITLALLRLVTSNEESKQALKVRRTLKIEQRENSKETRNDFEE
Ga0243741_1007194	Ga0243741_100719410	F097172	AAACVATAVVPAMADDVVTAEAATKKVTSAYRYHLEGYDKNGYPVNGFSKTSFYKDLNSLPSIKVGKTTINVPAVTSSVKSVSKEKDNPEYVTYVKFKALKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQVSKTGKKYCLNSIEDSDTIGKYDTLYENNYLARLRTILDNYKTEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQTYVFSVDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDMNIEYRK
Ga0243741_1014554	Ga0243741_10145543	F101193	MARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVYIFFRNSMNDAIGWFAAWLLFMLLLFLPQYIYVRFFMPYETLSEDETRKFHELQKN
Ga0243741_1017961	Ga0243741_10179612	F056623	MKSTEEMLQVAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPATQKRDWKPLILPLAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSASLCAAIGSIVSAMRRKPPKPVVVADEPELRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLHAVGCEXXXXRKG
Ga0243741_1019682	Ga0243741_10196822	F043413	MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKMASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECEGRPYALEIEGCGGGDFMSGMFLPDETGSWSDSPFAFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRKHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIDMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE
Ga0243741_1024120	Ga0243741_10241202	F082715	MMKFMKRSLSLLISAMLLLGCFALAEEAPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQTRWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTVADYDAVGYGYIMGSSEQNGTWQVFFVKGNEVVSTVNLDARDATILLVEPDEEGNG
Ga0243741_1028430	Ga0243741_10284301	F043945	MKHNLRMAFLSLLLVLTLGVMPVFAESADHDMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVWFDLDTGKGEMLEFALEDDENSHLLTDMPGFFRWSAESSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMDYDEETSEFGEPHGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE
Ga0243741_1032939	Ga0243741_10329391	F058154	LQDVPKMLVGRYFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMMCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVKVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
Ga0243741_1041421	Ga0243741_10414211	F050793	MRETGAIAPNDAEREKTMRKYEVDVPENVEMADIHAIQTRVKKHNLLTVALLIPLFAGYALRESSETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYASQEGYEPMDVDFGQMTDEEFRQFLDRSRI
Ga0243741_1052777	Ga0243741_10527771	F076190	ITISVKNVFTAASRVSGRVWSLVRITIPNGLKYVKIRVEKPQNNSLYPYFQREPL
Ga0243741_1061835	Ga0243741_10618352	F056682	MKMQSRAGKVANQSVGQSEMHPASFWAFPSKNRSTFPIQELRKNRENQEVL