3300029437: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_4_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029437
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133095 | Gp0281942 | Ga0242826
• Sample Name: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_4_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 252700959
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia obeum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F056682	Metagenome	137	Y
F070093	Metagenome	123	N
F076189	Metagenome	118	N
F081354	Metagenome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0242826_1002463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	15020
Ga0242826_1005975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6004
Ga0242826_1012376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2741
Ga0242826_1023205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia obeum	1400
Ga0242826_1033198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	967
Ga0242826_1045514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	698

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0242826_1002463	Ga0242826_100246318	F026489	NQKSASDFDALEPRKRGCTPLLTPKQWATPEKTEDSRLFGVKIF
Ga0242826_1005975	Ga0242826_10059752	F081354	LVRENQQSSAHNFVKDFSSIYPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNPLR
Ga0242826_1012376	Ga0242826_10123764	F070093	GVCRVSNFESLLLAEFYPFRIDPPMKPEQERLFKLYSGSGIHSLPELNPNLLQNIHRM
Ga0242826_1023205	Ga0242826_10232051	F026592	FCQNRLRTASTQGIVALAAQGGVATLTEQSDATFSVMQLFSADRE
Ga0242826_1033198	Ga0242826_10331982	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVPDLYREFAELLACFDLHAIQSAQKPLHMLCNFHENTLGLLIFYTNYAII
Ga0242826_1045514	Ga0242826_10455143	F056682	QNTMKMQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQELRKNREDQEVL