NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029410

3300029410: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 016_6_6_stool_2



Overview

Basic Information
IMG/M Taxon OID3300029410 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133095 | Gp0281959 | Ga0242843
Sample NameHuman feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 016_6_6_stool_2
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size174485273
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056309Metagenome137N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0242843_118174Not Available1184Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0242843_118174Ga0242843_1181742F056309SLSVVPLLLGDSGSLSVSYGMEPEQEALSIASFKD

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