3300029397: Anode biofilm microbial communities from acetate-fed MFC - AM-anode biofilm

Overview

Basic Information

• IMG/M Taxon OID: 3300029397
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133115 | Gp0282671 | Ga0243510
• Sample Name: Anode biofilm microbial communities from acetate-fed MFC - AM-anode biofilm
• Sequencing Status: Permanent Draft
• Sequencing Center: Tokyo University of Pharmacy and Life Sciences
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 110244754
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Electrode-Associated Soil And Biofilms Microbial Communities From Mfcs In Japan
• Type: Engineered
• Taxonomy: Engineered → Industrial Production → Engineered Product → Bioanode → Unclassified → Anode Biofilm → Electrode-Associated Soil And Biofilms Microbial Communities From Mfcs In Japan

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Japan: Tokyo
• Coordinates
  • Lat. (^o): 35.638
  • Long. (^o): 139.3817
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019989	Metagenome / Metatranscriptome	226	Y
F051329	Metagenome / Metatranscriptome	144	Y
F064893	Metagenome / Metatranscriptome	128	Y
F076964	Metagenome	117	Y
F089117	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243510_100021	All Organisms → cellular organisms → Bacteria	251235
Ga0243510_100051	All Organisms → cellular organisms → Bacteria → Acidobacteria	133354
Ga0243510_100205	All Organisms → cellular organisms → Bacteria	42252
Ga0243510_101539	All Organisms → cellular organisms → Bacteria	8991
Ga0243510_102036	All Organisms → cellular organisms → Bacteria	7137
Ga0243510_109409	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1926

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243510_100021	Ga0243510_100021126	F051329	MPYMQVPKRSPRQEYRLKQRERIDAAPVIAKKFPRLKALKVTLEYFDATGSTKQGEMKCKLNVDHAKSVLWFACPGVECSCGDFDLSEALVKAVRGGLKVATGELHCQGTRQRGDREPVVCRTLLRYKLNLNYD
Ga0243510_100051	Ga0243510_10005133	F064893	MPKIVRWEFLGSWLLFWVLCITVIGIPLAILYLLNGTVRIEHEVSDPERFVTEFRSGRLTRK
Ga0243510_100205	Ga0243510_10020527	F076964	MTDDSVWLRPPYGQGEPQEFEAKPEILVPLMVAGWNQCPPPEKNEELKSNVDN
Ga0243510_101539	Ga0243510_1015394	F089117	MNKSIGFQLIVYSLLLAGLSYLVHHLAPDLAQTTLVTGLVGGALCLVWGVRAAAGSESKALPILTLIPVSFVMLSQTVIVWTGGSEVVTGRRSAAVVLTVLLALSVGMLMRVAYAGLVFAGQPGSAVRGVGAKPGTTGKGAA
Ga0243510_102036	Ga0243510_1020366	F076964	MTDTRVWLQPPYGLGEPKEFEAKPEILVPLMVAGWSQCPPPERNEELKSVVDN
Ga0243510_109409	Ga0243510_1094091	F019989	MNTQNINQNTAAPSVTIAPRNPARGILNYVVTLTTFDDVRSYPCRSMESALKLAERFIIGVTKPRPAAPATEQPAPAAEPVAA