3300029385: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_5_3_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029385
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283146 | Ga0243985
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_5_3_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 247692059
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F044554	Metagenome	154	N
F059106	Metagenome	134	N
F067844	Metagenome	125	N
F070093	Metagenome	123	N
F084124	Metagenome	112	Y
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243985_1000071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	192128
Ga0243985_1003806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9350
Ga0243985_1003809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	9345
Ga0243985_1006992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5084
Ga0243985_1024767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1376
Ga0243985_1028502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1187
Ga0243985_1037601	Not Available	885
Ga0243985_1042756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	773

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243985_1000071	Ga0243985_100007170	F084124	LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFXXXXSTQTAWLFAPDKLLYRKIFMGAAQTRNF
Ga0243985_1003806	Ga0243985_100380614	F026489	KENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0243985_1003809	Ga0243985_10038091	F059106	IVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0243985_1006992	Ga0243985_10069923	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLMMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP
Ga0243985_1024767	Ga0243985_10247671	F070093	IDPPMEPEQERLSKLYSGSGIHSLPELNPNNPYSPHL
Ga0243985_1028502	Ga0243985_10285022	F090515	VCQEGVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0243985_1037601	Ga0243985_10376011	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLMLDFAISRYLFLSFSFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0243985_1042756	Ga0243985_10427562	F059106	IRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV