3300029379: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_5_1_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029379
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283067 | Ga0243906
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_5_1_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 272194270
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-Q4896	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F044555	Metagenome / Metatranscriptome	154	N
F056682	Metagenome	137	Y
F059106	Metagenome	134	N
F076189	Metagenome	118	N
F076190	Metagenome	118	Y
F087335	Metagenome	110	N
F088914	Metagenome	109	N
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243906_1002021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	17599
Ga0243906_1002605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13937
Ga0243906_1008663	All Organisms → Viruses → Predicted Viral	4191
Ga0243906_1011139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3243
Ga0243906_1013416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2721
Ga0243906_1015881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2323
Ga0243906_1026166	Not Available	1488
Ga0243906_1054428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	798
Ga0243906_1059019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	744
Ga0243906_1061549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-Q4896	718
Ga0243906_1064090	Not Available	693
Ga0243906_1065993	Not Available	675
Ga0243906_1087427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243906_1002021	Ga0243906_100202118	F026489	VNDLKCPPLGQEDAAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRAAPEKTEDSRLFGVKIF
Ga0243906_1002605	Ga0243906_100260516	F029444	MGVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLEKSSIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0243906_1008663	Ga0243906_10086637	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0243906_1011139	Ga0243906_10111391	F059106	ILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV
Ga0243906_1013416	Ga0243906_10134161	F076190	VFTVASRVSGYVWSLVRITVPNGLKSVRIRGRKTQNNSLYPYFQREPL
Ga0243906_1015881	Ga0243906_10158811	F088914	VCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK
Ga0243906_1026166	Ga0243906_102616610	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDGPKKA
Ga0243906_1054428	Ga0243906_10544282	F026489	MLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGWAPPEKPEDSRLFGVKIF
Ga0243906_1059019	Ga0243906_10590191	F026489	ALEPRKRGYSPLLTPKRRAPPEKTEDSRLFGVKIF
Ga0243906_1061549	Ga0243906_10615492	F076189	GTRTLSAPVFLKKRINHFKTMQRPAGCVICRALFFISFPPFIKPLLYVEKLQIGTVLPVVPDLYREFSEISVCFDLCAVQSAQKQLHMLCNFHENTLGLLIFYTNYAII
Ga0243906_1064090	Ga0243906_10640901	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPNLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPGDLVSLSQHHKR
Ga0243906_1065993	Ga0243906_10659931	F056682	AEKPHEQNTMKMQSRAGKVANQSVGQSEMHPASFWAFPSKNRSTFPIQELRKNRENQEVL
Ga0243906_1087427	Ga0243906_10874271	F087335	MIELYFNDANLLPENREEEQYAEAALNNLLAGKMADTGMCIMPCFYDAPLHKGLLYHLDDGTTLRIRPILNEAGEPELLIRCVTE