Sample 3300029364

Overview

Basic Information
IMG/M Taxon OID	3300029364 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133117 \| Gp0283047 \| Ga0243886
Sample Name	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 074_4_26_stool_1
Sequencing Status	Permanent Draft
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	181133993
Sequencing Scaffolds	14
Novel Protein Genes	15
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3
All Organisms → cellular organisms → Bacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F059106	Metagenome	134	N
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F076189	Metagenome	118	N
F076190	Metagenome	118	Y
F078004	Metagenome	117	N
F090514	Metagenome	108	N
F090515	Metagenome	108	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F032286

Metagenome / Metatranscriptome

180

F052660

Metagenome

142

F055715

Metagenome

138

F059106

Metagenome

134

F067845

Metagenome

125

F068811

Metagenome

124

F076189

Metagenome

118

F076190

Metagenome

118

F078004

Metagenome

117

F090514

Metagenome

108

F090515

Metagenome

108

Scaffold	Taxonomy	Length	IMG/M Link
Ga0243886_1000677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	34934	Open in IMG/M
Ga0243886_1001403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	18896	Open in IMG/M
Ga0243886_1001934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	13682	Open in IMG/M
Ga0243886_1002902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8791	Open in IMG/M
Ga0243886_1003252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea	7720	Open in IMG/M
Ga0243886_1003339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	7480	Open in IMG/M
Ga0243886_1003883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	6371	Open in IMG/M
Ga0243886_1003938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	6282	Open in IMG/M
Ga0243886_1005520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4407	Open in IMG/M
Ga0243886_1009677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2585	Open in IMG/M
Ga0243886_1015137	All Organisms → cellular organisms → Bacteria	1731	Open in IMG/M
Ga0243886_1016244	Not Available	1627	Open in IMG/M
Ga0243886_1018622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1438	Open in IMG/M
Ga0243886_1035687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	777	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0243886_1000677

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

34934

Open in IMG/M

Ga0243886_1001403

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

18896

Open in IMG/M

Ga0243886_1001934

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

13682

Open in IMG/M

Ga0243886_1002902

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

8791

Open in IMG/M

Ga0243886_1003252

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea

7720

Open in IMG/M

Ga0243886_1003339

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

7480

Open in IMG/M

Ga0243886_1003883

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

6371

Open in IMG/M

Ga0243886_1003938

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

6282

Open in IMG/M

Ga0243886_1005520

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

4407

Open in IMG/M

Ga0243886_1009677

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

2585

Open in IMG/M

Ga0243886_1015137

All Organisms → cellular organisms → Bacteria

1731

Open in IMG/M

Ga0243886_1016244

Not Available

1627

Open in IMG/M

Ga0243886_1018622

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1438

Open in IMG/M

Ga0243886_1035687

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

777

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0243886_1000677	Ga0243886_10006778	F090515	VTTCCKAGPKAALQGTAPGRVACLEFVEGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0243886_1001403	Ga0243886_100140316	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG
Ga0243886_1001934	Ga0243886_100193414	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0243886_1002902	Ga0243886_10029021	F052660	MCILHILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYRQFLHGGILMGIALPIPSHRAKSHDFACWWPATAGHSRSADALPG
Ga0243886_1003252	Ga0243886_10032529	F059106	IRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV
Ga0243886_1003339	Ga0243886_10033391	F076190	EARNGGWNGRSSWARTAGGSITISVKNVFTAASRVSERVWPLVHITVPNGLKSVKIRVEKPQNNSLYPYFQREPL
Ga0243886_1003883	Ga0243886_100388310	F055715	LTKADEFDKINELLIERAAKKFERASKNRLKKFLTNEKLCDKINELIRVGTAEILDN
Ga0243886_1003938	Ga0243886_10039386	F032286	MRSMVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQNRKRAEI
Ga0243886_1005520	Ga0243886_10055205	F068811	MDQDGSEHNICPNQEGLCPGKKPHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0243886_1009677	Ga0243886_10096773	F076189	VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLYNFHENTFGLLIFYANYAIL
Ga0243886_1015137	Ga0243886_10151371	F055715	LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRV
Ga0243886_1015851	Ga0243886_10158514	F078004	MSTPFYNNIIFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKA
Ga0243886_1016244	Ga0243886_10162441	F026489	KALAFLFVPRSAGAEAVAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0243886_1018622	Ga0243886_10186222	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGYSPLLTPKGWATPKKTEDSRLFGVKIF
Ga0243886_1035687	Ga0243886_10356873	F052660	MCILHVLPENTPEKIGQERAGTEWTVVKSKIRLCIRKRHYGRFLHGGILMGIALPIPSHRAKLHDFAFWWPAAAGHSRSADALPGKSNS

Scaffold ID

Protein ID

Family

Sequence

Ga0243886_1000677

Ga0243886_10006778

F090515

VTTCCKAGPKAALQGTAPGRVACLEFVEGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS

Ga0243886_1001403

Ga0243886_100140316

F090514

MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG

Ga0243886_1001934

Ga0243886_100193414

F067845

MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR

Ga0243886_1002902

Ga0243886_10029021

F052660

MCILHILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYRQFLHGGILMGIALPIPSHRAKSHDFACWWPATAGHSRSADALPG

Ga0243886_1003252

Ga0243886_10032529

F059106

IRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV

Ga0243886_1003339

Ga0243886_10033391

F076190

EARNGGWNGRSSWARTAGGSITISVKNVFTAASRVSERVWPLVHITVPNGLKSVKIRVEKPQNNSLYPYFQREPL

Ga0243886_1003883

Ga0243886_100388310

F055715

LTKADEFDKINELLIERAAKKFERASKNRLKKFLTNEKLCDKINELIRVGTAEILDN

Ga0243886_1003938

Ga0243886_10039386

F032286

MRSMVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQNRKRAEI

Ga0243886_1005520

Ga0243886_10055205

F068811

MDQDGSEHNICPNQEGLCPGKKPHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI

Ga0243886_1009677

Ga0243886_10096773

F076189

VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLYNFHENTFGLLIFYANYAIL

Ga0243886_1015137

Ga0243886_10151371

F055715

LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRV

Ga0243886_1015851

Ga0243886_10158514

F078004

MSTPFYNNIIFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKA

Ga0243886_1016244

Ga0243886_10162441

F026489

KALAFLFVPRSAGAEAVAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF

Ga0243886_1018622

Ga0243886_10186222

F026489

MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGYSPLLTPKGWATPKKTEDSRLFGVKIF

Ga0243886_1035687

Ga0243886_10356873

F052660

MCILHVLPENTPEKIGQERAGTEWTVVKSKIRLCIRKRHYGRFLHGGILMGIALPIPSHRAKLHDFAFWWPAAAGHSRSADALPGKSNS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029364: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 074_4_26_stool_1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences