3300029338: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 024_10_24_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029338
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282879 | Ga0243718
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 024_10_24_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 223567476
• Sequencing Scaffolds: 26
• Novel Protein Genes: 36
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F032286	Metagenome / Metatranscriptome	180	Y
F042095	Metagenome	159	N
F042936	Metagenome	157	N
F047125	Metagenome / Metatranscriptome	150	N
F056309	Metagenome	137	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F059106	Metagenome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243718_1000001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis	494856
Ga0243718_1000059	Not Available	150720
Ga0243718_1000353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	54792
Ga0243718_1001267	Not Available	20442
Ga0243718_1001761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15179
Ga0243718_1002474	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	11067
Ga0243718_1002542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	10823
Ga0243718_1002699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	10169
Ga0243718_1003223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8635
Ga0243718_1003468	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	8035

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243718_1000001	Ga0243718_1000001451	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRSDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0243718_1000059	Ga0243718_100005945	F099406	MAEVGYNSKFEGLEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSNYLDLSIFSGISGTLDEGSFGKVLDAYNNKITLGKFAGNYYSLDYFLEGRDFEGVFELKIVLVSFSDANTGEGVSVSDIEIQVGTYTVTQDKAYKVLNNMVTLSNTMMSYLRFMSKVPRVVTTLANLPKDTHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA
Ga0243718_1000059	Ga0243718_100005964	F090484	MDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEIVEGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTDTDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISIQSLPNISITVDNDKELDGESIFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0243718_1000059	Ga0243718_10000597	F098313	MKEKELDFVIYPLKLIITIGLDYKTLCDRFENAEFDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWDFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEE
Ga0243718_1000059	Ga0243718_100005990	F074964	MITKKNINRLQNVVIKENASNLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFALYSKVYKDTNADKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLVKETDEYKSTYVAVKIKSYSIRTIAKCVSEYLAHESNQQ
Ga0243718_1000353	Ga0243718_100035350	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKRRAAPEKTEDSRLFGVKIF
Ga0243718_1001267	Ga0243718_100126711	F089590	MKGKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILAVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS
Ga0243718_1001267	Ga0243718_100126712	F075481	MMRLRISLRAIVCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTADSVGVNKTRNDIKDLDNKIDIKSKDVDDKKGSRWPIVWIVAGILMILLVLVYIFKKIKVL
Ga0243718_1001267	Ga0243718_100126720	F106193	VGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAKYIKP
Ga0243718_1001267	Ga0243718_10012678	F042095	MAKTLYKYGASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGKDNYRIIFRSLAIQHMKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIIDIPGLEFLVVSHTMYVNDGISVDKLSRSNKLIYIELSNVGQRMTEMPEAITSKTEVYYLGIFNTLDLRDIESSGIRNIKNMKKLQTLELSSCYLDRYIKEFNDLPKLTSLRMSPGPSDMWNYFDINTLPFFEVDKINPNITDFVFLNDWVSGERRTGWNDDNMSGRGLEHLTSFVAPNSNSLRMDKLPDYIYEMRAITWFNVHASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGQSNGSPDTPMEKIYVLKNNYAQKWTIKPE
Ga0243718_1001761	Ga0243718_10017613	F032286	VTPVRHRALVFDARLSAGNTANDTLVTGNTRSFCRLMCLCVKRRNVKPDSKRRSLPDSALFHADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKMSENAPKNADFHAYGQDRKRAEI
Ga0243718_1002474	Ga0243718_100247413	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRDINGQSGLDLMLSVKEREPELWVVVISYMDDKDKRQKMVLPNFFSRNIRGNVYLQGSSKSSVSYYVDKLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
Ga0243718_1002474	Ga0243718_10024742	F057001	MTNKDINKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKAIVPALVALAKDKETVIQLCKDILPRVNNTFCAYKEVEREYYDKNDKDKNKKLKMNEIEDIAILGSSHKRFGYNEPIACDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVAYYLTHPKNER
Ga0243718_1002474	Ga0243718_10024747	F080673	MDEIVKLQDEILSYLRNNITKDEAYYILTTDKEMIEILISDKKGGSKRIKILDMEYTIERDDMLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKRRVILDLTGHRVDRDDRDKIDFMFIYYMARLCE
Ga0243718_1002542	Ga0243718_10025421	F032286	IVTPIRHRTLIFDVRLFAGNAADDALVTYGTFRFCRLVCLCVKQRNIILNGKRHSLLNSALFRADSHTVQKTISPFSLALILTFDFAALSEHRSCPEDRSRRFVPVGTLTLSRSWRLLRRGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNANFHAYGQDRKRAEI
Ga0243718_1002699	Ga0243718_10026991	F078822	NAFLKVFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243718_1003223	Ga0243718_10032234	F042936	MGRGGDKGRAWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGK
Ga0243718_1003468	Ga0243718_10034684	F076653	MTLSDKYFGWKDIFFDRFVHCCNEKSGQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTSLFERMGVKMKYNAYYCYAATSGIWYDNGFKERLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK
Ga0243718_1003988	Ga0243718_10039881	F090513	MAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY
Ga0243718_1004165	Ga0243718_100416513	F078005	MEKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDDNYEVSVMNIEMNLEVEANVMAGMDDMDFTCLMSEVYKQKAVKAIMMEKDDDEDN
Ga0243718_1004238	Ga0243718_10042382	F077313	MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDSVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQDREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADDGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLEKNNKIDDENTRRLNASVLSKAINDSNDIVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDVAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGVNTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTDTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRAWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDAKIGPNGQLIADPQGDILSYRILYPAQEVTKGKKG
Ga0243718_1004437	Ga0243718_10044372	F067845	MKHWKNLLVCLLVGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALNADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0243718_1004583	Ga0243718_10045831	F059106	MHVIAWKIRAILLQIFARIVDLKVRERLTEYLKKDIKYHRVIIGVLV
Ga0243718_1004699	Ga0243718_10046996	F068855	VEEKGPQPRKSIALQGLQAEKESENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEEGAAW
Ga0243718_1004803	Ga0243718_10048035	F056309	CLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALAIVSFKD
Ga0243718_1006997	Ga0243718_10069972	F047125	MDVVLLLMVLGVMLSGFWAADALDHIRKEIIRQEGNRRGWWS
Ga0243718_1015829	Ga0243718_10158292	F083451	MYKSEKEKQILDLLMSRKDIRKLVEKSNECYSKMDFVGAMRYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFSGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQMQYKARRYSPYPDRSRRGDSHKQNQRNFDGEDG
Ga0243718_1018613	Ga0243718_10186132	F058555	KDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMREGYRDRIEVNTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKALKAYAEGEIRIALSDIMIYSYKAKKNEDTKDIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKNLIGIGMQEISQSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLYILISTDYIINVFLGKKSAEMSKAG
Ga0243718_1020085	Ga0243718_10200852	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVKEVSKIGVVQSYELLMKQYNEFKDMKANATGKAKAD
Ga0243718_1022963	Ga0243718_10229632	F076189	LKKRINHFKTMQCPAGCVICRALFFISFPPFIKPLLYVEKLQIGTVLPVVSDLYREFAELLACFDLHAIQSAQKQLHMLCNFHENTFGLLIFYTNYAII
Ga0243718_1023636	Ga0243718_10236362	F078004	MIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
Ga0243718_1023840	Ga0243718_10238402	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDDNNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFSLNENELQRYQLDKDNVASFK
Ga0243718_1041427	Ga0243718_10414272	F097493	MYKFYSKNGTAQFYERGVEIDGTVYGIHTDRDILRIKRSVVNNKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKAFGSMSDMKQYVQSIMNGELTQDEINAMLMLQIAELKAGVGGE
Ga0243718_1058138	Ga0243718_10581381	F078693	MVVAPVRGGERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS
Ga0243718_1065502	Ga0243718_10655021	F026592	TVCQNRLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0243718_1066788	Ga0243718_10667882	F078822	SYFLSSTFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL